Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28935

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,849,128	-		RR42_RS28930	0.65	-0.0
1,849,143	-		RR42_RS28930	0.66	+0.2
1,849,271	+		RR42_RS28930	0.71	+1.5
1,849,272	-		RR42_RS28930	0.71	+1.4
1,849,272	-		RR42_RS28930	0.71	-2.1
1,849,396	+		RR42_RS28930	0.76	-0.2
1,849,397	-		RR42_RS28930	0.76	-0.6
1,849,397	-		RR42_RS28930	0.76	+1.3
1,849,792	+				+1.5
1,849,917	+				+0.9
1,850,077	+				-1.2
1,850,113	+				+1.0
1,850,114	-				+1.0
1,850,114	-				+1.2
1,850,114	-				-0.2
1,850,158	+		RR42_RS28935	0.14	+1.6
1,850,158	+		RR42_RS28935	0.14	+1.9
1,850,159	-		RR42_RS28935	0.14	+1.2
1,850,159	-		RR42_RS28935	0.14	+0.7
1,850,219	+		RR42_RS28935	0.25	+2.2
1,850,242	+		RR42_RS28935	0.29	+0.4
1,850,312	+		RR42_RS28935	0.41	+1.3
1,850,312	+		RR42_RS28935	0.41	+0.5
1,850,313	-		RR42_RS28935	0.41	+1.5
1,850,313	-		RR42_RS28935	0.41	+0.0
1,850,409	+		RR42_RS28935	0.57	+0.8
1,850,409	+		RR42_RS28935	0.57	+1.7
1,850,409	+		RR42_RS28935	0.57	+1.1
1,850,409	+		RR42_RS28935	0.57	+1.0
1,850,409	+		RR42_RS28935	0.57	+0.8
1,850,410	-		RR42_RS28935	0.57	+0.1
1,850,410	-		RR42_RS28935	0.57	+2.2
1,850,410	-		RR42_RS28935	0.57	+1.4
1,850,410	-		RR42_RS28935	0.57	-1.2
1,850,410	-		RR42_RS28935	0.57	+1.0
1,850,410	-		RR42_RS28935	0.57	+2.1
1,850,430	-		RR42_RS28935	0.61	+1.2
1,850,465	+		RR42_RS28935	0.67	-1.2
1,850,466	-				-0.2
1,850,600	+				-0.2
1,850,644	+				+0.8
1,850,644	+				+1.3
1,850,644	+				+2.3
1,850,645	-				+0.6
1,850,645	-				-1.1
1,850,645	-				+1.4
1,850,645	-				+1.5
1,850,757	-				-1.9
1,850,937	+				+0.5
1,850,953	+				-1.6
1,850,954	-				+1.2
1,850,962	-				+0.4
1,851,110	-				-0.8
1,851,110	-				-0.6
1,851,153	+				+1.4
1,851,153	+				+0.3
1,851,153	+				+0.3
1,851,153	+				+0.9
1,851,154	-				-2.2
1,851,154	-				+0.2
1,851,261	+		RR42_RS28940	0.17	+2.1
1,851,261	+		RR42_RS28940	0.17	+1.0
1,851,261	+		RR42_RS28940	0.17	+1.2
1,851,261	+		RR42_RS28940	0.17	-0.5
1,851,261	+		RR42_RS28940	0.17	+0.2
1,851,262	-		RR42_RS28940	0.17	+0.6
1,851,262	-		RR42_RS28940	0.17	-1.1
1,851,262	-		RR42_RS28940	0.17	-0.5
1,851,262	-		RR42_RS28940	0.17	-1.1
1,851,303	+		RR42_RS28940	0.20	+1.6
1,851,303	+		RR42_RS28940	0.20	-0.6
1,851,304	-		RR42_RS28940	0.20	-0.6
1,851,304	-		RR42_RS28940	0.20	+0.5
1,851,304	-		RR42_RS28940	0.20	-0.6
1,851,304	-		RR42_RS28940	0.20	-1.2
1,851,321	+		RR42_RS28940	0.22	-0.6
1,851,321	+		RR42_RS28940	0.22	+0.1
1,851,321	+		RR42_RS28940	0.22	+1.4
1,851,321	+		RR42_RS28940	0.22	+1.5
1,851,618	+		RR42_RS28940	0.46	+0.8
1,851,618	+		RR42_RS28940	0.46	-0.8
1,851,618	+		RR42_RS28940	0.46	-0.4
1,851,618	+		RR42_RS28940	0.46	-2.6
1,851,619	-		RR42_RS28940	0.46	-1.0
1,851,619	-		RR42_RS28940	0.46	+0.8
1,851,620	+		RR42_RS28940	0.46	+0.2
1,851,620	+		RR42_RS28940	0.46	-0.4
1,851,621	-		RR42_RS28940	0.46	+0.2