Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27640 and RR42_RS27645 are separated by 89 nucleotides RR42_RS27645 and RR42_RS27650 are separated by 75 nucleotides
RR42_RS27640: RR42_RS27640 - CDP-diacylglycerol pyrophosphatase, at 1,565,000 to 1,565,776
_RS27640
RR42_RS27645: RR42_RS27645 - hypothetical protein, at 1,565,866 to 1,566,120
_RS27645
RR42_RS27650: RR42_RS27650 - phosphate-binding protein, at 1,566,196 to 1,567,179
_RS27650
Position (kb) 1565
1566
1567 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1565.013 kb on + strand at 1565.013 kb on + strand at 1565.014 kb on - strand at 1565.175 kb on - strand, within RR42_RS27640 at 1565.395 kb on + strand, within RR42_RS27640 at 1565.455 kb on + strand, within RR42_RS27640 at 1565.499 kb on + strand, within RR42_RS27640 at 1565.499 kb on + strand, within RR42_RS27640 at 1565.618 kb on + strand, within RR42_RS27640 at 1565.618 kb on + strand, within RR42_RS27640 at 1565.619 kb on - strand, within RR42_RS27640 at 1565.619 kb on - strand, within RR42_RS27640 at 1565.619 kb on - strand, within RR42_RS27640 at 1565.619 kb on - strand, within RR42_RS27640 at 1565.619 kb on - strand, within RR42_RS27640 at 1565.775 kb on - strand at 1565.827 kb on + strand at 1565.876 kb on - strand at 1565.876 kb on - strand at 1566.053 kb on - strand, within RR42_RS27645 at 1566.067 kb on + strand, within RR42_RS27645 at 1566.068 kb on - strand, within RR42_RS27645 at 1566.260 kb on + strand at 1566.261 kb on - strand at 1566.425 kb on + strand, within RR42_RS27650 at 1566.426 kb on - strand, within RR42_RS27650 at 1566.551 kb on + strand, within RR42_RS27650 at 1566.551 kb on + strand, within RR42_RS27650 at 1566.566 kb on + strand, within RR42_RS27650 at 1566.567 kb on - strand, within RR42_RS27650 at 1566.596 kb on + strand, within RR42_RS27650 at 1566.596 kb on + strand, within RR42_RS27650 at 1566.597 kb on - strand, within RR42_RS27650 at 1566.701 kb on + strand, within RR42_RS27650 at 1566.833 kb on + strand, within RR42_RS27650 at 1566.834 kb on - strand, within RR42_RS27650 at 1566.834 kb on - strand, within RR42_RS27650 at 1566.834 kb on - strand, within RR42_RS27650 at 1566.838 kb on - strand, within RR42_RS27650 at 1567.046 kb on + strand, within RR42_RS27650 at 1567.047 kb on - strand, within RR42_RS27650 at 1567.074 kb on - strand, within RR42_RS27650 at 1567.074 kb on - strand, within RR42_RS27650 at 1567.076 kb on + strand, within RR42_RS27650 at 1567.076 kb on + strand, within RR42_RS27650 at 1567.076 kb on + strand, within RR42_RS27650 at 1567.077 kb on - strand, within RR42_RS27650 at 1567.077 kb on - strand, within RR42_RS27650 at 1567.106 kb on + strand at 1567.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,565,013 + +0.6 1,565,013 + -1.5 1,565,014 - +0.1 1,565,175 - RR42_RS27640 0.23 -0.2 1,565,395 + RR42_RS27640 0.51 +0.4 1,565,455 + RR42_RS27640 0.59 +0.9 1,565,499 + RR42_RS27640 0.64 -0.4 1,565,499 + RR42_RS27640 0.64 +0.0 1,565,618 + RR42_RS27640 0.80 -0.7 1,565,618 + RR42_RS27640 0.80 -0.6 1,565,619 - RR42_RS27640 0.80 -2.0 1,565,619 - RR42_RS27640 0.80 -2.5 1,565,619 - RR42_RS27640 0.80 +1.0 1,565,619 - RR42_RS27640 0.80 +0.3 1,565,619 - RR42_RS27640 0.80 +0.8 1,565,775 - +2.4 1,565,827 + +2.0 1,565,876 - +1.4 1,565,876 - -0.7 1,566,053 - RR42_RS27645 0.73 -0.1 1,566,067 + RR42_RS27645 0.79 +0.3 1,566,068 - RR42_RS27645 0.79 +0.9 1,566,260 + -1.6 1,566,261 - +1.2 1,566,425 + RR42_RS27650 0.23 +0.6 1,566,426 - RR42_RS27650 0.23 +0.3 1,566,551 + RR42_RS27650 0.36 -1.0 1,566,551 + RR42_RS27650 0.36 -1.5 1,566,566 + RR42_RS27650 0.38 -1.3 1,566,567 - RR42_RS27650 0.38 -0.7 1,566,596 + RR42_RS27650 0.41 +0.0 1,566,596 + RR42_RS27650 0.41 -0.2 1,566,597 - RR42_RS27650 0.41 +0.0 1,566,701 + RR42_RS27650 0.51 +1.2 1,566,833 + RR42_RS27650 0.65 -0.5 1,566,834 - RR42_RS27650 0.65 +1.2 1,566,834 - RR42_RS27650 0.65 -0.2 1,566,834 - RR42_RS27650 0.65 +0.5 1,566,838 - RR42_RS27650 0.65 -0.6 1,567,046 + RR42_RS27650 0.86 +0.4 1,567,047 - RR42_RS27650 0.86 -1.3 1,567,074 - RR42_RS27650 0.89 +0.5 1,567,074 - RR42_RS27650 0.89 -0.5 1,567,076 + RR42_RS27650 0.89 -0.8 1,567,076 + RR42_RS27650 0.89 -0.1 1,567,076 + RR42_RS27650 0.89 +0.9 1,567,077 - RR42_RS27650 0.90 +1.1 1,567,077 - RR42_RS27650 0.90 -2.4 1,567,106 + +1.5 1,567,106 + -1.7
Or see this region's nucleotide sequence