Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25945 and RR42_RS25950 are separated by 16 nucleotides RR42_RS25950 and RR42_RS25955 are separated by 38 nucleotides RR42_RS25955 and RR42_RS25960 are separated by 359 nucleotides
RR42_RS25945: RR42_RS25945 - MFS transporter, at 1,162,687 to 1,164,318
_RS25945
RR42_RS25950: RR42_RS25950 - hypothetical protein, at 1,164,335 to 1,165,504
_RS25950
RR42_RS25955: RR42_RS25955 - transcriptional regulator, at 1,165,543 to 1,165,941
_RS25955
RR42_RS25960: RR42_RS25960 - hypothetical protein, at 1,166,301 to 1,170,614
_RS25960
Position (kb) 1164
1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1163.389 kb on + strand, within RR42_RS25945 at 1163.389 kb on + strand, within RR42_RS25945 at 1163.390 kb on - strand, within RR42_RS25945 at 1163.659 kb on + strand, within RR42_RS25945 at 1163.660 kb on - strand, within RR42_RS25945 at 1163.660 kb on - strand, within RR42_RS25945 at 1163.885 kb on + strand, within RR42_RS25945 at 1164.255 kb on + strand at 1164.255 kb on + strand at 1164.255 kb on + strand at 1164.255 kb on + strand at 1164.256 kb on - strand at 1164.256 kb on - strand at 1164.256 kb on - strand at 1164.579 kb on + strand, within RR42_RS25950 at 1164.579 kb on + strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.582 kb on + strand, within RR42_RS25950 at 1164.582 kb on + strand, within RR42_RS25950 at 1164.735 kb on + strand, within RR42_RS25950 at 1164.735 kb on + strand, within RR42_RS25950 at 1164.875 kb on + strand, within RR42_RS25950 at 1165.218 kb on - strand, within RR42_RS25950 at 1165.312 kb on - strand, within RR42_RS25950 at 1165.332 kb on + strand, within RR42_RS25950 at 1165.332 kb on + strand, within RR42_RS25950 at 1165.353 kb on + strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.937 kb on - strand at 1165.937 kb on - strand at 1166.011 kb on - strand at 1166.038 kb on + strand at 1166.038 kb on + strand at 1166.039 kb on - strand at 1166.039 kb on - strand at 1166.047 kb on - strand at 1166.047 kb on - strand at 1166.190 kb on - strand at 1166.249 kb on + strand at 1166.251 kb on + strand at 1166.251 kb on + strand at 1166.252 kb on - strand at 1166.252 kb on - strand at 1166.252 kb on - strand at 1166.319 kb on + strand at 1166.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,163,389 + RR42_RS25945 0.43 +0.7 1,163,389 + RR42_RS25945 0.43 +0.9 1,163,390 - RR42_RS25945 0.43 +0.4 1,163,659 + RR42_RS25945 0.60 +0.1 1,163,660 - RR42_RS25945 0.60 +0.9 1,163,660 - RR42_RS25945 0.60 +1.1 1,163,885 + RR42_RS25945 0.73 +1.0 1,164,255 + -1.7 1,164,255 + -1.0 1,164,255 + +0.8 1,164,255 + +0.9 1,164,256 - +1.1 1,164,256 - +0.4 1,164,256 - -0.4 1,164,579 + RR42_RS25950 0.21 +0.7 1,164,579 + RR42_RS25950 0.21 -0.9 1,164,580 - RR42_RS25950 0.21 -0.1 1,164,580 - RR42_RS25950 0.21 +0.3 1,164,580 - RR42_RS25950 0.21 -1.1 1,164,580 - RR42_RS25950 0.21 +0.5 1,164,580 - RR42_RS25950 0.21 -0.5 1,164,580 - RR42_RS25950 0.21 -2.5 1,164,580 - RR42_RS25950 0.21 +1.6 1,164,580 - RR42_RS25950 0.21 -0.1 1,164,580 - RR42_RS25950 0.21 -0.7 1,164,582 + RR42_RS25950 0.21 -0.3 1,164,582 + RR42_RS25950 0.21 +0.6 1,164,735 + RR42_RS25950 0.34 -1.0 1,164,735 + RR42_RS25950 0.34 +0.1 1,164,875 + RR42_RS25950 0.46 -0.3 1,165,218 - RR42_RS25950 0.75 +0.6 1,165,312 - RR42_RS25950 0.84 -0.9 1,165,332 + RR42_RS25950 0.85 -0.3 1,165,332 + RR42_RS25950 0.85 -1.5 1,165,353 + RR42_RS25950 0.87 +2.2 1,165,354 - RR42_RS25950 0.87 -0.7 1,165,354 - RR42_RS25950 0.87 -0.1 1,165,354 - RR42_RS25950 0.87 +1.0 1,165,937 - -0.4 1,165,937 - +1.3 1,166,011 - -0.2 1,166,038 + +1.0 1,166,038 + +0.8 1,166,039 - +0.4 1,166,039 - +1.9 1,166,047 - +0.1 1,166,047 - +0.7 1,166,190 - -3.7 1,166,249 + +0.3 1,166,251 + -0.2 1,166,251 + +0.3 1,166,252 - -0.6 1,166,252 - +0.5 1,166,252 - +0.1 1,166,319 + -0.1 1,166,320 - +0.3
Or see this region's nucleotide sequence