Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25025 and RR42_RS25030 are separated by 53 nucleotides RR42_RS25030 and RR42_RS25035 overlap by 4 nucleotides RR42_RS25035 and RR42_RS25040 are separated by 6 nucleotides
RR42_RS25025: RR42_RS25025 - sugar ABC transporter ATPase, at 952,151 to 952,921
_RS25025
RR42_RS25030: RR42_RS25030 - ABC transporter permease, at 952,975 to 953,820
_RS25030
RR42_RS25035: RR42_RS25035 - ABC transporter permease, at 953,817 to 954,710
_RS25035
RR42_RS25040: RR42_RS25040 - amino acid ABC transporter substrate-binding protein, at 954,717 to 955,853
_RS25040
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 953.036 kb on + strand at 953.307 kb on - strand, within RR42_RS25030 at 953.682 kb on - strand, within RR42_RS25030 at 953.769 kb on - strand at 953.769 kb on - strand at 953.810 kb on + strand at 953.811 kb on - strand at 953.811 kb on - strand at 953.820 kb on + strand at 953.933 kb on + strand, within RR42_RS25035 at 953.934 kb on - strand, within RR42_RS25035 at 953.934 kb on - strand, within RR42_RS25035 at 953.935 kb on + strand, within RR42_RS25035 at 953.935 kb on + strand, within RR42_RS25035 at 953.935 kb on + strand, within RR42_RS25035 at 953.935 kb on + strand, within RR42_RS25035 at 953.936 kb on - strand, within RR42_RS25035 at 953.936 kb on - strand, within RR42_RS25035 at 953.936 kb on - strand, within RR42_RS25035 at 953.941 kb on + strand, within RR42_RS25035 at 954.179 kb on + strand, within RR42_RS25035 at 954.319 kb on + strand, within RR42_RS25035 at 954.319 kb on + strand, within RR42_RS25035 at 954.320 kb on - strand, within RR42_RS25035 at 954.428 kb on - strand, within RR42_RS25035 at 954.474 kb on + strand, within RR42_RS25035 at 954.495 kb on + strand, within RR42_RS25035 at 954.772 kb on + strand at 954.804 kb on - strand at 954.971 kb on - strand, within RR42_RS25040 at 955.168 kb on + strand, within RR42_RS25040 at 955.181 kb on - strand, within RR42_RS25040 at 955.181 kb on - strand, within RR42_RS25040 at 955.342 kb on + strand, within RR42_RS25040 at 955.384 kb on + strand, within RR42_RS25040 at 955.384 kb on - strand, within RR42_RS25040 at 955.385 kb on - strand, within RR42_RS25040 at 955.406 kb on + strand, within RR42_RS25040
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 953,036 + +0.2 953,307 - RR42_RS25030 0.39 +0.4 953,682 - RR42_RS25030 0.84 +0.3 953,769 - -0.0 953,769 - -0.0 953,810 + -0.6 953,811 - +1.3 953,811 - +0.1 953,820 + +0.6 953,933 + RR42_RS25035 0.13 -0.7 953,934 - RR42_RS25035 0.13 -0.1 953,934 - RR42_RS25035 0.13 -0.2 953,935 + RR42_RS25035 0.13 -0.9 953,935 + RR42_RS25035 0.13 -0.4 953,935 + RR42_RS25035 0.13 +1.3 953,935 + RR42_RS25035 0.13 +0.6 953,936 - RR42_RS25035 0.13 -0.1 953,936 - RR42_RS25035 0.13 -0.9 953,936 - RR42_RS25035 0.13 +0.4 953,941 + RR42_RS25035 0.14 -1.3 954,179 + RR42_RS25035 0.40 -0.2 954,319 + RR42_RS25035 0.56 -1.0 954,319 + RR42_RS25035 0.56 +0.8 954,320 - RR42_RS25035 0.56 -0.6 954,428 - RR42_RS25035 0.68 +0.6 954,474 + RR42_RS25035 0.73 -2.1 954,495 + RR42_RS25035 0.76 -0.0 954,772 + -0.3 954,804 - -1.9 954,971 - RR42_RS25040 0.22 -0.7 955,168 + RR42_RS25040 0.40 -0.6 955,181 - RR42_RS25040 0.41 +0.2 955,181 - RR42_RS25040 0.41 +0.5 955,342 + RR42_RS25040 0.55 -0.3 955,384 + RR42_RS25040 0.59 +3.1 955,384 - RR42_RS25040 0.59 -0.3 955,385 - RR42_RS25040 0.59 -0.8 955,406 + RR42_RS25040 0.61 +0.3
Or see this region's nucleotide sequence