Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24910 and RR42_RS24915 are separated by 344 nucleotides RR42_RS24915 and RR42_RS24920 are separated by 99 nucleotides RR42_RS24920 and RR42_RS24925 are separated by 2 nucleotides
RR42_RS24910: RR42_RS24910 - hypothetical protein, at 926,648 to 927,565
_RS24910
RR42_RS24915: RR42_RS24915 - hypothetical protein, at 927,910 to 928,101
_RS24915
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
Position (kb) 928
929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 927.208 kb on - strand, within RR42_RS24910 at 927.258 kb on + strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.358 kb on - strand, within RR42_RS24910 at 927.471 kb on + strand, within RR42_RS24910 at 927.550 kb on + strand at 927.617 kb on + strand at 927.617 kb on + strand at 927.618 kb on - strand at 927.618 kb on - strand at 927.798 kb on - strand at 927.857 kb on - strand at 927.857 kb on - strand at 927.909 kb on + strand at 927.910 kb on - strand at 927.910 kb on - strand at 927.960 kb on + strand, within RR42_RS24915 at 927.960 kb on + strand, within RR42_RS24915 at 927.961 kb on - strand, within RR42_RS24915 at 928.046 kb on + strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.162 kb on + strand at 928.276 kb on + strand at 928.369 kb on + strand, within RR42_RS24920 at 928.369 kb on + strand, within RR42_RS24920 at 928.370 kb on - strand, within RR42_RS24920 at 928.439 kb on - strand, within RR42_RS24920 at 928.537 kb on + strand, within RR42_RS24920 at 928.818 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.856 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.036 kb on + strand, within RR42_RS24920 at 929.037 kb on - strand, within RR42_RS24920 at 929.045 kb on - strand, within RR42_RS24920 at 929.047 kb on + strand, within RR42_RS24920 at 929.068 kb on + strand, within RR42_RS24920 at 929.174 kb on - strand, within RR42_RS24920 at 929.431 kb on + strand, within RR42_RS24920 at 929.625 kb on + strand at 929.671 kb on + strand at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 927,208 - RR42_RS24910 0.61 -3.9 927,258 + RR42_RS24910 0.66 -0.4 927,259 - RR42_RS24910 0.67 -0.3 927,259 - RR42_RS24910 0.67 +1.2 927,358 - RR42_RS24910 0.77 +0.5 927,471 + RR42_RS24910 0.90 +0.9 927,550 + +1.9 927,617 + -0.4 927,617 + +0.4 927,618 - +0.5 927,618 - -0.1 927,798 - +1.5 927,857 - -0.5 927,857 - +0.8 927,909 + -0.2 927,910 - -0.1 927,910 - +0.6 927,960 + RR42_RS24915 0.26 -1.5 927,960 + RR42_RS24915 0.26 +1.3 927,961 - RR42_RS24915 0.27 +0.1 928,046 + RR42_RS24915 0.71 -1.3 928,047 - RR42_RS24915 0.71 -0.5 928,047 - RR42_RS24915 0.71 -0.8 928,047 - RR42_RS24915 0.71 -1.1 928,047 - RR42_RS24915 0.71 -1.0 928,162 + +0.8 928,276 + -0.6 928,369 + RR42_RS24920 0.11 -0.6 928,369 + RR42_RS24920 0.11 +0.8 928,370 - RR42_RS24920 0.11 -1.5 928,439 - RR42_RS24920 0.15 +1.4 928,537 + RR42_RS24920 0.22 -0.3 928,818 + RR42_RS24920 0.40 +0.7 928,819 + RR42_RS24920 0.40 -0.2 928,819 + RR42_RS24920 0.40 +0.2 928,819 + RR42_RS24920 0.40 -0.8 928,819 + RR42_RS24920 0.40 -0.2 928,856 + RR42_RS24920 0.43 -0.5 929,032 + RR42_RS24920 0.54 -0.2 929,032 + RR42_RS24920 0.54 +1.2 929,032 + RR42_RS24920 0.54 +1.5 929,033 - RR42_RS24920 0.54 -0.0 929,033 - RR42_RS24920 0.54 +0.1 929,033 - RR42_RS24920 0.54 +2.0 929,036 + RR42_RS24920 0.54 +0.5 929,037 - RR42_RS24920 0.54 +0.3 929,045 - RR42_RS24920 0.55 -0.6 929,047 + RR42_RS24920 0.55 -1.2 929,068 + RR42_RS24920 0.56 -1.6 929,174 - RR42_RS24920 0.63 -2.2 929,431 + RR42_RS24920 0.80 -0.9 929,625 + -0.9 929,671 + +1.0 929,959 - RR42_RS24925 0.24 -0.3 930,146 - RR42_RS24925 0.45 +0.5 930,146 - RR42_RS24925 0.45 -0.9 930,146 - RR42_RS24925 0.45 +0.1 930,166 + RR42_RS24925 0.47 -0.3 930,167 - RR42_RS24925 0.47 +0.8 930,177 + RR42_RS24925 0.48 -3.1 930,264 + RR42_RS24925 0.58 +0.2 930,264 + RR42_RS24925 0.58 +1.7 930,264 + RR42_RS24925 0.58 -0.6 930,388 + RR42_RS24925 0.72 +0.8 930,389 - RR42_RS24925 0.72 -1.1 930,501 + RR42_RS24925 0.84 -0.3 930,502 - RR42_RS24925 0.84 +0.7 930,564 + -0.0 930,564 + +0.6 930,564 + -1.1 930,564 + -3.1 930,565 - +0.7 930,688 + +1.6 930,689 - +1.8 930,718 - +0.2
Or see this region's nucleotide sequence