Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24285

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24280 and RR42_RS24285 are separated by 1 nucleotides RR42_RS24280: RR42_RS24280 - gentisate 1,2-dioxygenase, at 774,475 to 775,524 _RS24280 RR42_RS24285: RR42_RS24285 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 775,526 to 777,196 _RS24285 Position (kb) 775 776 777 778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 774.668 kb on + strand, within RR42_RS24280at 774.669 kb on - strand, within RR42_RS24280at 774.671 kb on + strand, within RR42_RS24280at 774.803 kb on + strand, within RR42_RS24280at 774.803 kb on + strand, within RR42_RS24280at 774.803 kb on + strand, within RR42_RS24280at 774.803 kb on + strand, within RR42_RS24280at 774.863 kb on + strand, within RR42_RS24280at 775.257 kb on + strand, within RR42_RS24280at 775.257 kb on + strand, within RR42_RS24280at 775.458 kb on - strandat 775.524 kb on + strandat 775.524 kb on + strandat 775.524 kb on + strandat 775.525 kb on - strandat 775.525 kb on - strandat 775.545 kb on + strandat 775.661 kb on + strandat 775.661 kb on + strandat 775.683 kb on + strandat 775.683 kb on + strandat 775.684 kb on - strandat 775.684 kb on - strandat 775.684 kb on - strandat 775.684 kb on - strandat 775.799 kb on + strand, within RR42_RS24285at 775.799 kb on + strand, within RR42_RS24285at 775.800 kb on - strand, within RR42_RS24285at 775.800 kb on - strand, within RR42_RS24285at 775.803 kb on + strand, within RR42_RS24285at 775.803 kb on + strand, within RR42_RS24285at 775.823 kb on + strand, within RR42_RS24285at 775.953 kb on + strand, within RR42_RS24285at 775.960 kb on - strand, within RR42_RS24285at 776.008 kb on + strand, within RR42_RS24285at 776.008 kb on + strand, within RR42_RS24285at 776.008 kb on + strand, within RR42_RS24285at 776.009 kb on - strand, within RR42_RS24285at 776.009 kb on - strand, within RR42_RS24285at 776.260 kb on + strand, within RR42_RS24285at 776.261 kb on - strand, within RR42_RS24285at 776.462 kb on + strand, within RR42_RS24285at 776.462 kb on + strand, within RR42_RS24285at 776.539 kb on + strand, within RR42_RS24285at 776.539 kb on + strand, within RR42_RS24285at 776.540 kb on - strand, within RR42_RS24285at 776.540 kb on - strand, within RR42_RS24285at 776.540 kb on - strand, within RR42_RS24285at 776.540 kb on - strand, within RR42_RS24285at 776.540 kb on - strand, within RR42_RS24285at 776.542 kb on - strand, within RR42_RS24285at 776.605 kb on + strand, within RR42_RS24285at 776.605 kb on + strand, within RR42_RS24285at 776.605 kb on + strand, within RR42_RS24285at 776.606 kb on - strand, within RR42_RS24285at 776.606 kb on - strand, within RR42_RS24285at 776.610 kb on + strand, within RR42_RS24285at 776.610 kb on + strand, within RR42_RS24285at 776.611 kb on - strand, within RR42_RS24285at 776.611 kb on - strand, within RR42_RS24285at 776.618 kb on + strand, within RR42_RS24285at 776.747 kb on + strand, within RR42_RS24285at 776.747 kb on + strand, within RR42_RS24285at 776.748 kb on - strand, within RR42_RS24285at 776.790 kb on + strand, within RR42_RS24285at 776.937 kb on + strand, within RR42_RS24285at 776.937 kb on + strand, within RR42_RS24285at 776.989 kb on - strand, within RR42_RS24285at 777.257 kb on + strandat 777.258 kb on - strandat 777.300 kb on - strandat 777.303 kb on - strandat 777.360 kb on - strandat 777.380 kb on + strandat 777.381 kb on - strandat 777.430 kb on + strandat 777.431 kb on - strandat 777.431 kb on - strandat 777.444 kb on + strandat 777.444 kb on + strandat 777.444 kb on + strandat 777.445 kb on - strandat 777.549 kb on + strandat 777.550 kb on - strandat 777.586 kb on + strandat 777.586 kb on + strandat 777.587 kb on - strandat 777.587 kb on - strandat 777.595 kb on + strandat 777.697 kb on - strandat 777.761 kb on + strandat 777.762 kb on - strandat 778.004 kb on + strandat 778.004 kb on + strandat 778.004 kb on + strandat 778.004 kb on + strandat 778.005 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
remove
774,668 + RR42_RS24280 0.18 +0.3
774,669 - RR42_RS24280 0.18 -0.2
774,671 + RR42_RS24280 0.19 +2.4
774,803 + RR42_RS24280 0.31 -3.1
774,803 + RR42_RS24280 0.31 +0.5
774,803 + RR42_RS24280 0.31 -0.4
774,803 + RR42_RS24280 0.31 +0.8
774,863 + RR42_RS24280 0.37 -1.9
775,257 + RR42_RS24280 0.74 -1.3
775,257 + RR42_RS24280 0.74 +0.8
775,458 - -0.7
775,524 + -1.8
775,524 + +0.8
775,524 + +1.5
775,525 - -0.3
775,525 - -0.2
775,545 + +1.5
775,661 + +0.3
775,661 + -0.6
775,683 + +0.6
775,683 + +4.1
775,684 - +0.7
775,684 - +0.2
775,684 - +0.5
775,684 - +1.0
775,799 + RR42_RS24285 0.16 +0.5
775,799 + RR42_RS24285 0.16 -0.0
775,800 - RR42_RS24285 0.16 -0.3
775,800 - RR42_RS24285 0.16 +0.1
775,803 + RR42_RS24285 0.17 -0.7
775,803 + RR42_RS24285 0.17 -3.6
775,823 + RR42_RS24285 0.18 +0.6
775,953 + RR42_RS24285 0.26 +1.3
775,960 - RR42_RS24285 0.26 +0.3
776,008 + RR42_RS24285 0.29 -0.2
776,008 + RR42_RS24285 0.29 +0.2
776,008 + RR42_RS24285 0.29 +0.5
776,009 - RR42_RS24285 0.29 +1.3
776,009 - RR42_RS24285 0.29 -0.9
776,260 + RR42_RS24285 0.44 -0.9
776,261 - RR42_RS24285 0.44 +1.1
776,462 + RR42_RS24285 0.56 -0.6
776,462 + RR42_RS24285 0.56 +1.2
776,539 + RR42_RS24285 0.61 -1.8
776,539 + RR42_RS24285 0.61 +3.2
776,540 - RR42_RS24285 0.61 +0.4
776,540 - RR42_RS24285 0.61 +0.1
776,540 - RR42_RS24285 0.61 +1.0
776,540 - RR42_RS24285 0.61 -0.6
776,540 - RR42_RS24285 0.61 +0.7
776,542 - RR42_RS24285 0.61 -0.5
776,605 + RR42_RS24285 0.65 +1.0
776,605 + RR42_RS24285 0.65 +0.8
776,605 + RR42_RS24285 0.65 -1.4
776,606 - RR42_RS24285 0.65 +0.9
776,606 - RR42_RS24285 0.65 -2.9
776,610 + RR42_RS24285 0.65 +0.4
776,610 + RR42_RS24285 0.65 -1.0
776,611 - RR42_RS24285 0.65 +1.9
776,611 - RR42_RS24285 0.65 +0.4
776,618 + RR42_RS24285 0.65 -0.2
776,747 + RR42_RS24285 0.73 +0.1
776,747 + RR42_RS24285 0.73 +0.9
776,748 - RR42_RS24285 0.73 -0.3
776,790 + RR42_RS24285 0.76 -4.0
776,937 + RR42_RS24285 0.84 +1.2
776,937 + RR42_RS24285 0.84 -0.8
776,989 - RR42_RS24285 0.88 +0.6
777,257 + -0.8
777,258 - +0.3
777,300 - +0.7
777,303 - -0.0
777,360 - +0.7
777,380 + -1.8
777,381 - -3.2
777,430 + -0.4
777,431 - -0.3
777,431 - -2.3
777,444 + +0.5
777,444 + -0.9
777,444 + +1.6
777,445 - -0.6
777,549 + -0.4
777,550 - -0.5
777,586 + +0.4
777,586 + -0.3
777,587 - -0.9
777,587 - -1.7
777,595 + -2.0
777,697 - +0.8
777,761 + +1.5
777,762 - +0.1
778,004 + -0.2
778,004 + +0.3
778,004 + +0.2
778,004 + -0.6
778,005 - +0.9

Or see this region's nucleotide sequence