Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24145

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24140 and RR42_RS24145 are separated by 200 nucleotidesRR42_RS24145 and RR42_RS24150 are separated by 14 nucleotidesRR42_RS24150 and RR42_RS24155 are separated by 35 nucleotides RR42_RS24140: RR42_RS24140 - hypothetical protein, at 742,145 to 743,056 _RS24140 RR42_RS24145: RR42_RS24145 - hypothetical protein, at 743,257 to 744,894 _RS24145 RR42_RS24150: RR42_RS24150 - thioesterase, at 744,909 to 745,316 _RS24150 RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494 _RS24155 Position (kb) 743 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 742.292 kb on + strand, within RR42_RS24140at 742.293 kb on - strand, within RR42_RS24140at 742.484 kb on + strand, within RR42_RS24140at 742.570 kb on + strand, within RR42_RS24140at 742.572 kb on + strand, within RR42_RS24140at 742.820 kb on + strand, within RR42_RS24140at 742.820 kb on + strand, within RR42_RS24140at 742.821 kb on - strand, within RR42_RS24140at 742.839 kb on - strand, within RR42_RS24140at 742.905 kb on - strand, within RR42_RS24140at 743.018 kb on - strandat 743.068 kb on - strandat 743.068 kb on - strandat 743.082 kb on + strandat 743.083 kb on - strandat 743.086 kb on - strandat 743.086 kb on - strandat 743.091 kb on + strandat 743.114 kb on + strandat 743.272 kb on + strandat 743.272 kb on + strandat 743.272 kb on + strandat 743.273 kb on - strandat 743.273 kb on - strandat 743.273 kb on - strandat 743.273 kb on - strandat 743.273 kb on - strandat 743.297 kb on - strandat 743.299 kb on + strandat 743.299 kb on + strandat 743.300 kb on - strandat 743.463 kb on - strand, within RR42_RS24145at 743.629 kb on + strand, within RR42_RS24145at 743.629 kb on + strand, within RR42_RS24145at 743.629 kb on + strand, within RR42_RS24145at 743.630 kb on - strand, within RR42_RS24145at 743.715 kb on + strand, within RR42_RS24145at 743.716 kb on - strand, within RR42_RS24145at 743.800 kb on - strand, within RR42_RS24145at 743.828 kb on + strand, within RR42_RS24145at 743.828 kb on + strand, within RR42_RS24145at 743.828 kb on + strand, within RR42_RS24145at 743.828 kb on + strand, within RR42_RS24145at 743.829 kb on - strand, within RR42_RS24145at 743.829 kb on - strand, within RR42_RS24145at 743.829 kb on - strand, within RR42_RS24145at 743.929 kb on + strand, within RR42_RS24145at 743.929 kb on + strand, within RR42_RS24145at 743.930 kb on - strand, within RR42_RS24145at 743.930 kb on - strand, within RR42_RS24145at 744.064 kb on + strand, within RR42_RS24145at 744.314 kb on + strand, within RR42_RS24145at 744.315 kb on - strand, within RR42_RS24145at 744.378 kb on - strand, within RR42_RS24145at 744.437 kb on - strand, within RR42_RS24145at 744.608 kb on - strand, within RR42_RS24145at 744.608 kb on - strand, within RR42_RS24145at 744.642 kb on + strand, within RR42_RS24145at 744.642 kb on + strand, within RR42_RS24145at 744.745 kb on + strandat 744.746 kb on - strandat 744.887 kb on + strandat 744.888 kb on - strandat 744.888 kb on - strandat 744.914 kb on + strandat 744.915 kb on - strandat 744.919 kb on - strandat 744.919 kb on - strandat 744.924 kb on + strandat 744.985 kb on - strand, within RR42_RS24150at 744.985 kb on - strand, within RR42_RS24150at 745.108 kb on + strandat 745.119 kb on - strand, within RR42_RS24150at 745.132 kb on - strand, within RR42_RS24150at 745.136 kb on - strand, within RR42_RS24150at 745.136 kb on - strand, within RR42_RS24150at 745.136 kb on - strand, within RR42_RS24150at 745.250 kb on - strand, within RR42_RS24150at 745.336 kb on + strandat 745.363 kb on + strandat 745.363 kb on + strandat 745.363 kb on + strandat 745.368 kb on + strandat 745.391 kb on + strandat 745.442 kb on + strandat 745.443 kb on - strandat 745.443 kb on - strandat 745.659 kb on + strand, within RR42_RS24155at 745.681 kb on - strand, within RR42_RS24155at 745.689 kb on + strand, within RR42_RS24155at 745.689 kb on + strand, within RR42_RS24155at 745.817 kb on + strand, within RR42_RS24155at 745.817 kb on + strand, within RR42_RS24155at 745.882 kb on + strand, within RR42_RS24155at 745.882 kb on + strand, within RR42_RS24155at 745.882 kb on + strand, within RR42_RS24155at 745.883 kb on - strand, within RR42_RS24155at 745.891 kb on - strand, within RR42_RS24155

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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742,292 + RR42_RS24140 0.16 -0.8
742,293 - RR42_RS24140 0.16 +0.1
742,484 + RR42_RS24140 0.37 -1.0
742,570 + RR42_RS24140 0.47 +0.7
742,572 + RR42_RS24140 0.47 -1.4
742,820 + RR42_RS24140 0.74 -3.1
742,820 + RR42_RS24140 0.74 -0.3
742,821 - RR42_RS24140 0.74 +0.9
742,839 - RR42_RS24140 0.76 -1.5
742,905 - RR42_RS24140 0.83 +0.1
743,018 - +1.3
743,068 - +0.6
743,068 - +0.7
743,082 + +0.6
743,083 - -1.1
743,086 - +0.4
743,086 - -0.1
743,091 + +0.4
743,114 + +0.0
743,272 + +0.7
743,272 + -1.2
743,272 + -1.7
743,273 - +0.8
743,273 - +1.0
743,273 - -0.4
743,273 - +0.3
743,273 - -0.4
743,297 - -1.2
743,299 + +0.1
743,299 + -0.1
743,300 - -3.0
743,463 - RR42_RS24145 0.13 -0.8
743,629 + RR42_RS24145 0.23 -2.2
743,629 + RR42_RS24145 0.23 -0.8
743,629 + RR42_RS24145 0.23 -1.8
743,630 - RR42_RS24145 0.23 +1.5
743,715 + RR42_RS24145 0.28 -1.6
743,716 - RR42_RS24145 0.28 +0.6
743,800 - RR42_RS24145 0.33 -1.3
743,828 + RR42_RS24145 0.35 +0.3
743,828 + RR42_RS24145 0.35 -0.4
743,828 + RR42_RS24145 0.35 -2.2
743,828 + RR42_RS24145 0.35 -0.5
743,829 - RR42_RS24145 0.35 -0.0
743,829 - RR42_RS24145 0.35 -0.7
743,829 - RR42_RS24145 0.35 -0.6
743,929 + RR42_RS24145 0.41 -1.9
743,929 + RR42_RS24145 0.41 +0.7
743,930 - RR42_RS24145 0.41 +0.2
743,930 - RR42_RS24145 0.41 -1.2
744,064 + RR42_RS24145 0.49 +1.2
744,314 + RR42_RS24145 0.65 -4.1
744,315 - RR42_RS24145 0.65 -0.6
744,378 - RR42_RS24145 0.68 +1.0
744,437 - RR42_RS24145 0.72 -0.6
744,608 - RR42_RS24145 0.82 +0.2
744,608 - RR42_RS24145 0.82 +1.8
744,642 + RR42_RS24145 0.85 +0.3
744,642 + RR42_RS24145 0.85 -0.8
744,745 + -0.8
744,746 - +0.6
744,887 + +0.6
744,888 - +1.2
744,888 - +1.0
744,914 + -0.2
744,915 - -0.2
744,919 - -2.3
744,919 - +0.6
744,924 + +0.6
744,985 - RR42_RS24150 0.19 +1.0
744,985 - RR42_RS24150 0.19 +0.8
745,108 + +0.4
745,119 - RR42_RS24150 0.51 +0.4
745,132 - RR42_RS24150 0.55 +0.8
745,136 - RR42_RS24150 0.56 -0.1
745,136 - RR42_RS24150 0.56 -1.0
745,136 - RR42_RS24150 0.56 +0.7
745,250 - RR42_RS24150 0.84 -1.1
745,336 + -1.1
745,363 + -0.6
745,363 + +0.2
745,363 + +0.7
745,368 + -0.0
745,391 + -0.6
745,442 + +0.2
745,443 - -0.4
745,443 - -1.8
745,659 + RR42_RS24155 0.27 -1.2
745,681 - RR42_RS24155 0.29 -0.9
745,689 + RR42_RS24155 0.29 -0.2
745,689 + RR42_RS24155 0.29 +0.3
745,817 + RR42_RS24155 0.41 +0.2
745,817 + RR42_RS24155 0.41 -1.7
745,882 + RR42_RS24155 0.46 +1.0
745,882 + RR42_RS24155 0.46 -1.3
745,882 + RR42_RS24155 0.46 -0.2
745,883 - RR42_RS24155 0.46 +0.0
745,891 - RR42_RS24155 0.47 -1.8

Or see this region's nucleotide sequence