Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24100 and RR42_RS24105 are separated by 384 nucleotides RR42_RS24105 and RR42_RS24110 are separated by 608 nucleotides
RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516
_RS24100
RR42_RS24105: RR42_RS24105 - membrane protein, at 731,901 to 733,004
_RS24105
RR42_RS24110: RR42_RS24110 - C4-dicarboxylate ABC transporter permease, at 733,613 to 734,929
_RS24110
Position (kb) 731
732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 730.906 kb on - strand at 730.906 kb on - strand at 731.137 kb on + strand, within RR42_RS24100 at 731.220 kb on + strand, within RR42_RS24100 at 731.232 kb on + strand, within RR42_RS24100 at 731.232 kb on + strand, within RR42_RS24100 at 731.233 kb on - strand, within RR42_RS24100 at 731.233 kb on - strand, within RR42_RS24100 at 731.330 kb on + strand, within RR42_RS24100 at 731.331 kb on - strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.458 kb on + strand, within RR42_RS24100 at 731.512 kb on + strand at 731.512 kb on + strand at 731.513 kb on - strand at 731.513 kb on - strand at 731.513 kb on - strand at 731.544 kb on - strand at 731.544 kb on - strand at 731.552 kb on + strand at 731.553 kb on - strand at 731.553 kb on - strand at 731.568 kb on + strand at 731.568 kb on + strand at 731.569 kb on - strand at 731.630 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.895 kb on + strand at 731.895 kb on + strand at 731.895 kb on + strand at 731.896 kb on - strand at 731.896 kb on - strand at 731.896 kb on - strand at 731.902 kb on + strand at 731.903 kb on - strand at 731.903 kb on - strand at 732.017 kb on - strand, within RR42_RS24105 at 732.017 kb on - strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.137 kb on + strand, within RR42_RS24105 at 732.152 kb on + strand, within RR42_RS24105 at 732.152 kb on + strand, within RR42_RS24105 at 732.173 kb on + strand, within RR42_RS24105 at 732.173 kb on - strand, within RR42_RS24105 at 732.173 kb on - strand, within RR42_RS24105 at 732.175 kb on + strand, within RR42_RS24105 at 732.176 kb on - strand, within RR42_RS24105 at 732.259 kb on + strand, within RR42_RS24105 at 732.288 kb on + strand, within RR42_RS24105 at 732.343 kb on + strand, within RR42_RS24105 at 732.344 kb on - strand, within RR42_RS24105 at 732.356 kb on + strand, within RR42_RS24105 at 732.371 kb on + strand, within RR42_RS24105 at 732.371 kb on + strand, within RR42_RS24105 at 732.372 kb on - strand, within RR42_RS24105 at 732.372 kb on - strand, within RR42_RS24105 at 732.376 kb on + strand, within RR42_RS24105 at 732.377 kb on - strand, within RR42_RS24105 at 732.384 kb on + strand, within RR42_RS24105 at 732.384 kb on + strand, within RR42_RS24105 at 732.385 kb on - strand, within RR42_RS24105 at 732.388 kb on - strand, within RR42_RS24105 at 732.490 kb on + strand, within RR42_RS24105 at 732.490 kb on + strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.494 kb on + strand, within RR42_RS24105 at 732.529 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.643 kb on + strand, within RR42_RS24105 at 732.643 kb on + strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.680 kb on + strand, within RR42_RS24105 at 732.894 kb on + strand at 733.048 kb on + strand at 733.121 kb on + strand at 733.122 kb on - strand at 733.161 kb on + strand at 733.172 kb on + strand at 733.172 kb on + strand at 733.172 kb on + strand at 733.192 kb on + strand at 733.291 kb on - strand at 733.291 kb on - strand at 733.318 kb on + strand at 733.318 kb on + strand at 733.319 kb on - strand at 733.372 kb on + strand at 733.372 kb on + strand at 733.372 kb on + strand at 733.373 kb on - strand at 733.373 kb on - strand at 733.376 kb on + strand at 733.377 kb on - strand at 733.389 kb on - strand at 733.389 kb on - strand at 733.391 kb on + strand at 733.454 kb on - strand at 733.457 kb on - strand at 733.516 kb on - strand at 733.632 kb on - strand at 733.694 kb on - strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.715 kb on + strand at 733.716 kb on - strand at 733.716 kb on - strand at 733.716 kb on - strand at 733.763 kb on + strand, within RR42_RS24110 at 733.764 kb on - strand, within RR42_RS24110 at 733.847 kb on + strand, within RR42_RS24110 at 733.847 kb on + strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 730,906 - -1.9 730,906 - -0.8 731,137 + RR42_RS24100 0.26 -1.9 731,220 + RR42_RS24100 0.42 -2.3 731,232 + RR42_RS24100 0.45 -1.2 731,232 + RR42_RS24100 0.45 +1.2 731,233 - RR42_RS24100 0.45 -1.2 731,233 - RR42_RS24100 0.45 +1.2 731,330 + RR42_RS24100 0.64 +0.9 731,331 - RR42_RS24100 0.64 -1.4 731,352 + RR42_RS24100 0.68 -2.5 731,352 + RR42_RS24100 0.68 +0.5 731,352 + RR42_RS24100 0.68 -0.6 731,458 + RR42_RS24100 0.89 +1.0 731,512 + -1.2 731,512 + +0.3 731,513 - -1.0 731,513 - -2.8 731,513 - -1.9 731,544 - -3.5 731,544 - +1.1 731,552 + +0.3 731,553 - -1.0 731,553 - +0.1 731,568 + +0.6 731,568 + +3.1 731,569 - +1.8 731,630 - +2.3 731,647 - -1.0 731,647 - +0.6 731,647 - +1.3 731,647 - +0.4 731,895 + +0.2 731,895 + -0.2 731,895 + -0.1 731,896 - +0.6 731,896 - -1.9 731,896 - -0.3 731,902 + -1.4 731,903 - +1.0 731,903 - -1.6 732,017 - RR42_RS24105 0.11 -1.0 732,017 - RR42_RS24105 0.11 -0.3 732,058 + RR42_RS24105 0.14 +1.7 732,058 + RR42_RS24105 0.14 -1.1 732,058 + RR42_RS24105 0.14 +0.7 732,059 - RR42_RS24105 0.14 +1.0 732,059 - RR42_RS24105 0.14 -1.4 732,059 - RR42_RS24105 0.14 +0.1 732,059 - RR42_RS24105 0.14 -2.3 732,059 - RR42_RS24105 0.14 +0.3 732,059 - RR42_RS24105 0.14 -3.7 732,059 - RR42_RS24105 0.14 -2.5 732,137 + RR42_RS24105 0.21 -0.6 732,152 + RR42_RS24105 0.23 -0.0 732,152 + RR42_RS24105 0.23 +1.5 732,173 + RR42_RS24105 0.25 +0.8 732,173 - RR42_RS24105 0.25 +0.5 732,173 - RR42_RS24105 0.25 +0.6 732,175 + RR42_RS24105 0.25 -0.1 732,176 - RR42_RS24105 0.25 -0.1 732,259 + RR42_RS24105 0.32 -1.2 732,288 + RR42_RS24105 0.35 -0.9 732,343 + RR42_RS24105 0.40 -2.2 732,344 - RR42_RS24105 0.40 +0.3 732,356 + RR42_RS24105 0.41 -0.9 732,371 + RR42_RS24105 0.43 -0.6 732,371 + RR42_RS24105 0.43 -0.1 732,372 - RR42_RS24105 0.43 -0.2 732,372 - RR42_RS24105 0.43 +0.1 732,376 + RR42_RS24105 0.43 +1.2 732,377 - RR42_RS24105 0.43 +1.0 732,384 + RR42_RS24105 0.44 -0.0 732,384 + RR42_RS24105 0.44 -1.0 732,385 - RR42_RS24105 0.44 +0.5 732,388 - RR42_RS24105 0.44 -2.1 732,490 + RR42_RS24105 0.53 -1.0 732,490 + RR42_RS24105 0.53 +0.1 732,491 - RR42_RS24105 0.53 -0.0 732,491 - RR42_RS24105 0.53 +0.3 732,491 - RR42_RS24105 0.53 +1.6 732,491 - RR42_RS24105 0.53 +2.0 732,494 + RR42_RS24105 0.54 -2.3 732,529 + RR42_RS24105 0.57 +1.4 732,565 + RR42_RS24105 0.60 +0.5 732,565 + RR42_RS24105 0.60 -1.3 732,565 + RR42_RS24105 0.60 +0.6 732,565 + RR42_RS24105 0.60 +0.9 732,566 - RR42_RS24105 0.60 +1.3 732,566 - RR42_RS24105 0.60 -0.6 732,566 - RR42_RS24105 0.60 +1.4 732,566 - RR42_RS24105 0.60 -0.8 732,566 - RR42_RS24105 0.60 +0.2 732,566 - RR42_RS24105 0.60 +0.4 732,643 + RR42_RS24105 0.67 -0.6 732,643 + RR42_RS24105 0.67 -0.0 732,644 - RR42_RS24105 0.67 -1.3 732,644 - RR42_RS24105 0.67 -1.4 732,644 - RR42_RS24105 0.67 -1.3 732,680 + RR42_RS24105 0.71 +0.2 732,894 + +0.6 733,048 + -1.4 733,121 + +1.1 733,122 - -0.6 733,161 + -0.8 733,172 + +0.7 733,172 + -1.7 733,172 + +0.8 733,192 + -0.9 733,291 - -0.5 733,291 - +0.3 733,318 + +0.4 733,318 + +1.3 733,319 - +0.7 733,372 + +0.7 733,372 + +0.5 733,372 + -0.4 733,373 - +0.3 733,373 - -0.6 733,376 + -0.2 733,377 - -3.1 733,389 - -0.1 733,389 - +1.0 733,391 + -1.3 733,454 - +0.4 733,457 - -0.0 733,516 - -1.3 733,632 - -0.6 733,694 - +0.5 733,695 + -1.8 733,695 + +2.6 733,695 + -2.0 733,695 + +0.9 733,715 + +0.5 733,716 - +1.0 733,716 - -0.1 733,716 - -1.1 733,763 + RR42_RS24110 0.11 +0.3 733,764 - RR42_RS24110 0.11 +3.0 733,847 + RR42_RS24110 0.18 +0.0 733,847 + RR42_RS24110 0.18 -0.6 733,848 - RR42_RS24110 0.18 +0.4 733,848 - RR42_RS24110 0.18 +0.9 733,848 - RR42_RS24110 0.18 +0.6 733,848 - RR42_RS24110 0.18 -0.4
Or see this region's nucleotide sequence