Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23580 and RR42_RS23585 are separated by 161 nucleotides RR42_RS23585 and RR42_RS23590 are separated by 8 nucleotides
RR42_RS23580: RR42_RS23580 - hypothetical protein, at 616,408 to 617,061
_RS23580
RR42_RS23585: RR42_RS23585 - hypothetical protein, at 617,223 to 617,873
_RS23585
RR42_RS23590: RR42_RS23590 - FkbM family methyltransferase, at 617,882 to 618,952
_RS23590
Position (kb) 617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.255 kb on + strand at 616.255 kb on + strand at 616.256 kb on - strand at 616.410 kb on - strand at 616.410 kb on - strand at 616.422 kb on - strand at 616.482 kb on - strand, within RR42_RS23580 at 616.586 kb on + strand, within RR42_RS23580 at 616.636 kb on + strand, within RR42_RS23580 at 616.664 kb on + strand, within RR42_RS23580 at 616.664 kb on + strand, within RR42_RS23580 at 616.665 kb on - strand, within RR42_RS23580 at 616.674 kb on - strand, within RR42_RS23580 at 616.742 kb on + strand, within RR42_RS23580 at 616.742 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.839 kb on - strand, within RR42_RS23580 at 616.839 kb on - strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.847 kb on + strand, within RR42_RS23580 at 616.847 kb on + strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.856 kb on + strand, within RR42_RS23580 at 616.903 kb on + strand, within RR42_RS23580 at 616.903 kb on + strand, within RR42_RS23580 at 617.022 kb on - strand at 617.116 kb on - strand at 617.326 kb on + strand, within RR42_RS23585 at 617.326 kb on + strand, within RR42_RS23585 at 617.327 kb on - strand, within RR42_RS23585 at 617.327 kb on - strand, within RR42_RS23585 at 617.327 kb on - strand, within RR42_RS23585 at 617.515 kb on + strand, within RR42_RS23585 at 617.590 kb on + strand, within RR42_RS23585 at 617.591 kb on - strand at 617.722 kb on + strand, within RR42_RS23585 at 617.722 kb on + strand, within RR42_RS23585 at 617.723 kb on - strand, within RR42_RS23585 at 617.723 kb on - strand, within RR42_RS23585 at 617.853 kb on - strand at 618.027 kb on + strand, within RR42_RS23590 at 618.075 kb on - strand, within RR42_RS23590 at 618.075 kb on - strand, within RR42_RS23590 at 618.175 kb on - strand, within RR42_RS23590 at 618.175 kb on - strand, within RR42_RS23590 at 618.322 kb on - strand, within RR42_RS23590 at 618.591 kb on + strand, within RR42_RS23590 at 618.592 kb on - strand, within RR42_RS23590 at 618.592 kb on - strand, within RR42_RS23590 at 618.665 kb on + strand, within RR42_RS23590 at 618.665 kb on + strand, within RR42_RS23590 at 618.665 kb on + strand, within RR42_RS23590 at 618.665 kb on + strand, within RR42_RS23590 at 618.666 kb on - strand, within RR42_RS23590 at 618.666 kb on - strand, within RR42_RS23590 at 618.783 kb on + strand, within RR42_RS23590 at 618.783 kb on + strand, within RR42_RS23590 at 618.783 kb on + strand, within RR42_RS23590 at 618.784 kb on - strand, within RR42_RS23590 at 618.784 kb on - strand, within RR42_RS23590
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 616,255 + +0.6 616,255 + +0.7 616,256 - +0.5 616,410 - +1.6 616,410 - -0.6 616,422 - +2.3 616,482 - RR42_RS23580 0.11 -0.1 616,586 + RR42_RS23580 0.27 -0.3 616,636 + RR42_RS23580 0.35 -3.2 616,664 + RR42_RS23580 0.39 +0.2 616,664 + RR42_RS23580 0.39 +0.3 616,665 - RR42_RS23580 0.39 -1.4 616,674 - RR42_RS23580 0.41 -0.5 616,742 + RR42_RS23580 0.51 -1.5 616,742 + RR42_RS23580 0.51 -1.1 616,838 + RR42_RS23580 0.66 -1.7 616,838 + RR42_RS23580 0.66 -0.9 616,838 + RR42_RS23580 0.66 -0.2 616,839 - RR42_RS23580 0.66 -2.2 616,839 - RR42_RS23580 0.66 +1.0 616,841 + RR42_RS23580 0.66 +0.5 616,841 + RR42_RS23580 0.66 +0.9 616,841 + RR42_RS23580 0.66 +0.0 616,847 + RR42_RS23580 0.67 +0.5 616,847 + RR42_RS23580 0.67 -1.0 616,848 - RR42_RS23580 0.67 -0.7 616,848 - RR42_RS23580 0.67 -0.5 616,848 - RR42_RS23580 0.67 +0.5 616,848 - RR42_RS23580 0.67 -0.9 616,856 + RR42_RS23580 0.69 +0.1 616,903 + RR42_RS23580 0.76 +1.0 616,903 + RR42_RS23580 0.76 -1.5 617,022 - +0.9 617,116 - -1.1 617,326 + RR42_RS23585 0.16 +0.2 617,326 + RR42_RS23585 0.16 -0.7 617,327 - RR42_RS23585 0.16 -0.8 617,327 - RR42_RS23585 0.16 -0.6 617,327 - RR42_RS23585 0.16 -0.1 617,515 + RR42_RS23585 0.45 -3.0 617,590 + RR42_RS23585 0.56 -0.1 617,591 - -1.6 617,722 + RR42_RS23585 0.77 +1.0 617,722 + RR42_RS23585 0.77 -0.0 617,723 - RR42_RS23585 0.77 -0.4 617,723 - RR42_RS23585 0.77 -0.5 617,853 - +0.6 618,027 + RR42_RS23590 0.14 +0.3 618,075 - RR42_RS23590 0.18 +0.4 618,075 - RR42_RS23590 0.18 +1.5 618,175 - RR42_RS23590 0.27 -0.3 618,175 - RR42_RS23590 0.27 +0.9 618,322 - RR42_RS23590 0.41 +0.1 618,591 + RR42_RS23590 0.66 +0.4 618,592 - RR42_RS23590 0.66 -0.1 618,592 - RR42_RS23590 0.66 +1.7 618,665 + RR42_RS23590 0.73 -1.6 618,665 + RR42_RS23590 0.73 +1.8 618,665 + RR42_RS23590 0.73 +0.4 618,665 + RR42_RS23590 0.73 +0.8 618,666 - RR42_RS23590 0.73 +2.4 618,666 - RR42_RS23590 0.73 +0.2 618,783 + RR42_RS23590 0.84 -1.2 618,783 + RR42_RS23590 0.84 -0.6 618,783 + RR42_RS23590 0.84 +0.6 618,784 - RR42_RS23590 0.84 -1.2 618,784 - RR42_RS23590 0.84 +1.0
Or see this region's nucleotide sequence