Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23100 and RR42_RS23105 are separated by 135 nucleotides RR42_RS23105 and RR42_RS23110 are separated by 193 nucleotides RR42_RS23110 and RR42_RS23115 are separated by 149 nucleotides
RR42_RS23100: RR42_RS23100 - AraC family transcriptional regulator, at 517,259 to 518,224
_RS23100
RR42_RS23105: RR42_RS23105 - hypothetical protein, at 518,360 to 518,818
_RS23105
RR42_RS23110: RR42_RS23110 - isochorismatase, at 519,012 to 519,542
_RS23110
RR42_RS23115: RR42_RS23115 - serine hydrolase, at 519,692 to 521,401
_RS23115
Position (kb) 518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.515 kb on + strand, within RR42_RS23100 at 517.584 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.689 kb on - strand, within RR42_RS23100 at 517.738 kb on + strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.092 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.155 kb on + strand at 518.155 kb on + strand at 518.202 kb on - strand at 518.250 kb on + strand at 518.251 kb on - strand at 518.419 kb on - strand, within RR42_RS23105 at 518.419 kb on - strand, within RR42_RS23105 at 518.608 kb on + strand, within RR42_RS23105 at 518.608 kb on + strand, within RR42_RS23105 at 518.665 kb on - strand, within RR42_RS23105 at 518.665 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.704 kb on - strand, within RR42_RS23105 at 518.918 kb on + strand at 518.918 kb on + strand at 518.918 kb on + strand at 518.982 kb on - strand at 519.317 kb on - strand, within RR42_RS23110 at 519.363 kb on - strand, within RR42_RS23110 at 519.513 kb on + strand at 519.513 kb on + strand at 519.514 kb on - strand at 519.514 kb on - strand at 519.693 kb on + strand at 519.741 kb on + strand at 519.741 kb on + strand at 519.741 kb on + strand at 519.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 517,515 + RR42_RS23100 0.27 +0.1 517,584 + RR42_RS23100 0.34 +0.0 517,592 + RR42_RS23100 0.34 +1.3 517,592 + RR42_RS23100 0.34 -1.1 517,592 + RR42_RS23100 0.34 -0.9 517,593 - RR42_RS23100 0.35 -0.7 517,593 - RR42_RS23100 0.35 -0.5 517,593 - RR42_RS23100 0.35 -0.9 517,688 + RR42_RS23100 0.44 -0.4 517,688 + RR42_RS23100 0.44 -1.5 517,689 - RR42_RS23100 0.45 -0.7 517,738 + RR42_RS23100 0.50 -0.1 518,052 - RR42_RS23100 0.82 +1.7 518,052 - RR42_RS23100 0.82 -0.5 518,052 - RR42_RS23100 0.82 -1.6 518,092 + RR42_RS23100 0.86 +0.0 518,118 + RR42_RS23100 0.89 +1.3 518,118 + RR42_RS23100 0.89 -0.8 518,119 - RR42_RS23100 0.89 +0.4 518,119 - RR42_RS23100 0.89 -0.5 518,119 - RR42_RS23100 0.89 -2.2 518,155 + +1.5 518,155 + -2.0 518,202 - -0.9 518,250 + +0.3 518,251 - -2.1 518,419 - RR42_RS23105 0.13 -1.6 518,419 - RR42_RS23105 0.13 -1.9 518,608 + RR42_RS23105 0.54 -1.1 518,608 + RR42_RS23105 0.54 -2.0 518,665 - RR42_RS23105 0.66 -1.3 518,665 - RR42_RS23105 0.66 -0.4 518,671 - RR42_RS23105 0.68 -0.4 518,671 - RR42_RS23105 0.68 -0.8 518,671 - RR42_RS23105 0.68 +0.3 518,704 - RR42_RS23105 0.75 -2.2 518,918 + +0.2 518,918 + +1.0 518,918 + -1.6 518,982 - +0.8 519,317 - RR42_RS23110 0.57 +1.4 519,363 - RR42_RS23110 0.66 -0.5 519,513 + +0.1 519,513 + +1.0 519,514 - -2.1 519,514 - -0.2 519,693 + +0.1 519,741 + +1.9 519,741 + +1.2 519,741 + +0.6 519,742 - +0.8
Or see this region's nucleotide sequence