Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23090 and RR42_RS23095 are separated by 92 nucleotides RR42_RS23095 and RR42_RS23100 are separated by 89 nucleotides
RR42_RS23090: RR42_RS23090 - 2,5-dioxovalerate dehydrogenase, at 514,711 to 516,312
_RS23090
RR42_RS23095: RR42_RS23095 - Zn-dependent hydrolase, at 516,405 to 517,169
_RS23095
RR42_RS23100: RR42_RS23100 - AraC family transcriptional regulator, at 517,259 to 518,224
_RS23100
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 515.497 kb on + strand, within RR42_RS23090 at 515.815 kb on + strand, within RR42_RS23090 at 515.816 kb on - strand, within RR42_RS23090 at 516.116 kb on - strand, within RR42_RS23090 at 516.142 kb on - strand, within RR42_RS23090 at 516.142 kb on - strand, within RR42_RS23090 at 516.190 kb on + strand at 516.191 kb on - strand at 516.304 kb on - strand at 516.428 kb on + strand at 516.428 kb on + strand at 516.675 kb on + strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.872 kb on - strand, within RR42_RS23095 at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.164 kb on - strand at 517.164 kb on - strand at 517.164 kb on - strand at 517.515 kb on + strand, within RR42_RS23100 at 517.584 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.689 kb on - strand, within RR42_RS23100 at 517.738 kb on + strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.092 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.155 kb on + strand at 518.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 515,497 + RR42_RS23090 0.49 -1.6 515,815 + RR42_RS23090 0.69 +1.5 515,816 - RR42_RS23090 0.69 -0.2 516,116 - RR42_RS23090 0.88 +0.4 516,142 - RR42_RS23090 0.89 +0.5 516,142 - RR42_RS23090 0.89 -3.3 516,190 + -1.4 516,191 - +0.0 516,304 - -2.3 516,428 + -1.3 516,428 + +0.2 516,675 + RR42_RS23095 0.35 +0.6 516,695 - RR42_RS23095 0.38 +0.1 516,695 - RR42_RS23095 0.38 -2.8 516,715 - RR42_RS23095 0.41 -0.2 516,715 - RR42_RS23095 0.41 -0.5 516,872 - RR42_RS23095 0.61 -1.0 517,163 + +1.2 517,163 + -1.0 517,163 + +1.4 517,163 + -1.6 517,164 - -1.6 517,164 - +0.1 517,164 - +0.3 517,515 + RR42_RS23100 0.27 +0.1 517,584 + RR42_RS23100 0.34 +0.0 517,592 + RR42_RS23100 0.34 +1.3 517,592 + RR42_RS23100 0.34 -1.1 517,592 + RR42_RS23100 0.34 -0.9 517,593 - RR42_RS23100 0.35 -0.7 517,593 - RR42_RS23100 0.35 -0.5 517,593 - RR42_RS23100 0.35 -0.9 517,688 + RR42_RS23100 0.44 -0.4 517,688 + RR42_RS23100 0.44 -1.5 517,689 - RR42_RS23100 0.45 -0.7 517,738 + RR42_RS23100 0.50 -0.1 518,052 - RR42_RS23100 0.82 +1.7 518,052 - RR42_RS23100 0.82 -0.5 518,052 - RR42_RS23100 0.82 -1.6 518,092 + RR42_RS23100 0.86 +0.0 518,118 + RR42_RS23100 0.89 +1.3 518,118 + RR42_RS23100 0.89 -0.8 518,119 - RR42_RS23100 0.89 +0.4 518,119 - RR42_RS23100 0.89 -0.5 518,119 - RR42_RS23100 0.89 -2.2 518,155 + +1.5 518,155 + -2.0
Or see this region's nucleotide sequence