Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22955 and RR42_RS22960 are separated by 168 nucleotides RR42_RS22960 and RR42_RS22965 are separated by 45 nucleotides RR42_RS22965 and RR42_RS22970 overlap by 4 nucleotides
RR42_RS22955: RR42_RS22955 - isocitrate dehydrogenase, at 483,676 to 484,707
_RS22955
RR42_RS22960: RR42_RS22960 - alpha/beta hydrolase, at 484,876 to 485,757
_RS22960
RR42_RS22965: RR42_RS22965 - 3-oxoadipate CoA-transferase, at 485,803 to 486,438
_RS22965
RR42_RS22970: RR42_RS22970 - 3-oxoadipate CoA-transferase, at 486,435 to 487,127
_RS22970
Position (kb) 484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 483.977 kb on + strand, within RR42_RS22955 at 483.977 kb on + strand, within RR42_RS22955 at 483.977 kb on + strand, within RR42_RS22955 at 484.017 kb on + strand, within RR42_RS22955 at 484.057 kb on + strand, within RR42_RS22955 at 484.058 kb on - strand, within RR42_RS22955 at 484.073 kb on - strand, within RR42_RS22955 at 484.073 kb on - strand, within RR42_RS22955 at 484.075 kb on + strand, within RR42_RS22955 at 484.076 kb on - strand, within RR42_RS22955 at 484.128 kb on + strand, within RR42_RS22955 at 484.171 kb on + strand, within RR42_RS22955 at 484.171 kb on + strand, within RR42_RS22955 at 484.280 kb on - strand, within RR42_RS22955 at 484.371 kb on + strand, within RR42_RS22955 at 484.895 kb on - strand at 484.895 kb on - strand at 485.054 kb on - strand, within RR42_RS22960 at 485.062 kb on + strand, within RR42_RS22960 at 485.062 kb on + strand, within RR42_RS22960 at 485.251 kb on + strand, within RR42_RS22960 at 485.252 kb on - strand, within RR42_RS22960 at 485.252 kb on - strand, within RR42_RS22960 at 485.285 kb on + strand, within RR42_RS22960 at 485.286 kb on - strand, within RR42_RS22960 at 485.428 kb on + strand, within RR42_RS22960 at 485.428 kb on + strand, within RR42_RS22960 at 485.428 kb on + strand, within RR42_RS22960 at 485.428 kb on + strand, within RR42_RS22960 at 485.428 kb on + strand, within RR42_RS22960 at 485.429 kb on - strand, within RR42_RS22960 at 485.429 kb on - strand, within RR42_RS22960 at 485.429 kb on - strand, within RR42_RS22960 at 485.429 kb on - strand, within RR42_RS22960 at 485.429 kb on - strand, within RR42_RS22960 at 485.517 kb on + strand, within RR42_RS22960 at 485.518 kb on - strand, within RR42_RS22960 at 485.551 kb on + strand, within RR42_RS22960 at 485.551 kb on + strand, within RR42_RS22960 at 485.551 kb on + strand, within RR42_RS22960 at 485.551 kb on + strand, within RR42_RS22960 at 485.552 kb on - strand, within RR42_RS22960 at 485.552 kb on - strand, within RR42_RS22960 at 485.552 kb on - strand, within RR42_RS22960 at 485.810 kb on - strand at 485.916 kb on + strand, within RR42_RS22965 at 485.919 kb on - strand, within RR42_RS22965 at 485.919 kb on - strand, within RR42_RS22965 at 486.122 kb on + strand, within RR42_RS22965 at 486.300 kb on + strand, within RR42_RS22965 at 486.374 kb on + strand, within RR42_RS22965 at 486.619 kb on + strand, within RR42_RS22970
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 483,977 + RR42_RS22955 0.29 -2.0 483,977 + RR42_RS22955 0.29 -1.2 483,977 + RR42_RS22955 0.29 -0.4 484,017 + RR42_RS22955 0.33 +0.6 484,057 + RR42_RS22955 0.37 +0.1 484,058 - RR42_RS22955 0.37 -1.8 484,073 - RR42_RS22955 0.38 -2.2 484,073 - RR42_RS22955 0.38 +0.7 484,075 + RR42_RS22955 0.39 -1.7 484,076 - RR42_RS22955 0.39 +0.8 484,128 + RR42_RS22955 0.44 -0.9 484,171 + RR42_RS22955 0.48 -0.1 484,171 + RR42_RS22955 0.48 +1.1 484,280 - RR42_RS22955 0.59 +2.1 484,371 + RR42_RS22955 0.67 -0.0 484,895 - +0.8 484,895 - +0.7 485,054 - RR42_RS22960 0.20 -2.9 485,062 + RR42_RS22960 0.21 +0.8 485,062 + RR42_RS22960 0.21 -0.7 485,251 + RR42_RS22960 0.43 +0.4 485,252 - RR42_RS22960 0.43 +1.1 485,252 - RR42_RS22960 0.43 -0.6 485,285 + RR42_RS22960 0.46 -0.2 485,286 - RR42_RS22960 0.46 -0.4 485,428 + RR42_RS22960 0.63 -2.6 485,428 + RR42_RS22960 0.63 +1.5 485,428 + RR42_RS22960 0.63 -2.6 485,428 + RR42_RS22960 0.63 -3.2 485,428 + RR42_RS22960 0.63 -0.5 485,429 - RR42_RS22960 0.63 +1.2 485,429 - RR42_RS22960 0.63 +0.6 485,429 - RR42_RS22960 0.63 -1.2 485,429 - RR42_RS22960 0.63 -1.8 485,429 - RR42_RS22960 0.63 -1.9 485,517 + RR42_RS22960 0.73 -1.8 485,518 - RR42_RS22960 0.73 -0.3 485,551 + RR42_RS22960 0.77 -0.9 485,551 + RR42_RS22960 0.77 -1.2 485,551 + RR42_RS22960 0.77 -1.3 485,551 + RR42_RS22960 0.77 +0.7 485,552 - RR42_RS22960 0.77 -0.9 485,552 - RR42_RS22960 0.77 -1.8 485,552 - RR42_RS22960 0.77 -0.2 485,810 - -0.0 485,916 + RR42_RS22965 0.18 -0.1 485,919 - RR42_RS22965 0.18 +0.2 485,919 - RR42_RS22965 0.18 -0.2 486,122 + RR42_RS22965 0.50 -3.3 486,300 + RR42_RS22965 0.78 +0.0 486,374 + RR42_RS22965 0.90 -0.2 486,619 + RR42_RS22970 0.27 -0.4
Or see this region's nucleotide sequence