Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22895 and RR42_RS22900 overlap by 4 nucleotides RR42_RS22900 and RR42_RS22905 are separated by 81 nucleotides
RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084
_RS22895
RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814
_RS22900
RR42_RS22905: RR42_RS22905 - myristoyl transferase, at 471,896 to 472,885
_RS22905
Position (kb) 470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 469.722 kb on - strand, within RR42_RS22895 at 469.722 kb on - strand, within RR42_RS22895 at 469.809 kb on + strand, within RR42_RS22895 at 470.414 kb on + strand, within RR42_RS22900 at 470.513 kb on + strand, within RR42_RS22900 at 470.550 kb on - strand, within RR42_RS22900 at 470.622 kb on + strand, within RR42_RS22900 at 470.623 kb on - strand, within RR42_RS22900 at 470.642 kb on + strand, within RR42_RS22900 at 470.673 kb on + strand, within RR42_RS22900 at 470.673 kb on + strand, within RR42_RS22900 at 470.674 kb on - strand, within RR42_RS22900 at 470.804 kb on + strand, within RR42_RS22900 at 470.804 kb on + strand, within RR42_RS22900 at 470.805 kb on - strand, within RR42_RS22900 at 470.874 kb on - strand, within RR42_RS22900 at 470.888 kb on + strand, within RR42_RS22900 at 470.939 kb on + strand, within RR42_RS22900 at 470.940 kb on - strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.222 kb on - strand, within RR42_RS22900 at 471.365 kb on + strand, within RR42_RS22900 at 471.366 kb on - strand, within RR42_RS22900 at 471.616 kb on + strand, within RR42_RS22900 at 471.725 kb on + strand at 471.725 kb on + strand at 471.725 kb on + strand at 471.816 kb on - strand at 472.001 kb on + strand, within RR42_RS22905 at 472.378 kb on + strand, within RR42_RS22905 at 472.535 kb on + strand, within RR42_RS22905 at 472.628 kb on + strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.724 kb on + strand, within RR42_RS22905 at 472.725 kb on - strand, within RR42_RS22905
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 469,722 - RR42_RS22895 0.83 -0.6 469,722 - RR42_RS22895 0.83 +0.1 469,809 + RR42_RS22895 0.87 -0.2 470,414 + RR42_RS22900 0.19 +0.5 470,513 + RR42_RS22900 0.25 +0.1 470,550 - RR42_RS22900 0.27 -0.3 470,622 + RR42_RS22900 0.31 -0.4 470,623 - RR42_RS22900 0.31 +0.9 470,642 + RR42_RS22900 0.32 -0.5 470,673 + RR42_RS22900 0.34 -0.9 470,673 + RR42_RS22900 0.34 -0.1 470,674 - RR42_RS22900 0.34 -0.2 470,804 + RR42_RS22900 0.42 -1.8 470,804 + RR42_RS22900 0.42 -0.2 470,805 - RR42_RS22900 0.42 +0.5 470,874 - RR42_RS22900 0.46 +1.3 470,888 + RR42_RS22900 0.47 -0.6 470,939 + RR42_RS22900 0.49 -1.5 470,940 - RR42_RS22900 0.50 +0.5 470,957 + RR42_RS22900 0.51 +0.1 470,957 + RR42_RS22900 0.51 +0.6 470,958 - RR42_RS22900 0.51 +1.1 470,958 - RR42_RS22900 0.51 +0.7 471,221 + RR42_RS22900 0.66 +0.7 471,221 + RR42_RS22900 0.66 -2.0 471,221 + RR42_RS22900 0.66 +1.1 471,221 + RR42_RS22900 0.66 +2.3 471,221 + RR42_RS22900 0.66 -1.3 471,222 - RR42_RS22900 0.66 +0.3 471,365 + RR42_RS22900 0.74 -0.9 471,366 - RR42_RS22900 0.74 +0.4 471,616 + RR42_RS22900 0.89 -3.8 471,725 + -0.4 471,725 + -0.1 471,725 + +0.6 471,816 - -1.2 472,001 + RR42_RS22905 0.11 -1.0 472,378 + RR42_RS22905 0.49 +2.6 472,535 + RR42_RS22905 0.65 +2.5 472,628 + RR42_RS22905 0.74 -1.9 472,629 - RR42_RS22905 0.74 -1.8 472,629 - RR42_RS22905 0.74 -1.7 472,629 - RR42_RS22905 0.74 -0.1 472,724 + RR42_RS22905 0.84 -0.1 472,725 - RR42_RS22905 0.84 +0.7
Or see this region's nucleotide sequence