Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22880 and RR42_RS22885 are separated by 1 nucleotides RR42_RS22885 and RR42_RS22890 are separated by 129 nucleotides RR42_RS22890 and RR42_RS22895 are separated by 287 nucleotides
RR42_RS22880: RR42_RS22880 - ABC transporter permease, at 465,033 to 465,938
_RS22880
RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806
_RS22885
RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667
_RS22890
RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084
_RS22895
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.048 kb on + strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.316 kb on - strand, within RR42_RS22885 at 466.408 kb on + strand, within RR42_RS22885 at 466.569 kb on - strand, within RR42_RS22885 at 466.574 kb on + strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.690 kb on + strand, within RR42_RS22885 at 466.691 kb on - strand, within RR42_RS22885 at 466.751 kb on - strand at 466.786 kb on - strand at 467.033 kb on + strand, within RR42_RS22890 at 467.033 kb on + strand, within RR42_RS22890 at 467.034 kb on - strand, within RR42_RS22890 at 467.124 kb on - strand, within RR42_RS22890 at 467.141 kb on + strand, within RR42_RS22890 at 467.142 kb on - strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.170 kb on + strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.502 kb on - strand, within RR42_RS22890 at 467.752 kb on + strand at 468.372 kb on - strand, within RR42_RS22895 at 468.400 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.574 kb on - strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.607 kb on - strand, within RR42_RS22895 at 468.630 kb on + strand, within RR42_RS22895
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 466,048 + RR42_RS22885 0.12 +0.5 466,049 - RR42_RS22885 0.13 -0.4 466,049 - RR42_RS22885 0.13 -0.9 466,049 - RR42_RS22885 0.13 -2.1 466,049 - RR42_RS22885 0.13 -0.1 466,171 + RR42_RS22885 0.27 -0.8 466,171 + RR42_RS22885 0.27 -1.7 466,171 + RR42_RS22885 0.27 +0.7 466,316 - RR42_RS22885 0.43 +0.6 466,408 + RR42_RS22885 0.54 +1.5 466,569 - RR42_RS22885 0.73 +0.5 466,574 + RR42_RS22885 0.73 -2.5 466,627 - RR42_RS22885 0.79 +0.6 466,627 - RR42_RS22885 0.79 +1.2 466,627 - RR42_RS22885 0.79 +1.9 466,690 + RR42_RS22885 0.87 -2.3 466,691 - RR42_RS22885 0.87 -0.1 466,751 - +1.9 466,786 - -0.7 467,033 + RR42_RS22890 0.13 +0.3 467,033 + RR42_RS22890 0.13 -2.4 467,034 - RR42_RS22890 0.13 +1.5 467,124 - RR42_RS22890 0.26 +1.1 467,141 + RR42_RS22890 0.28 -1.5 467,142 - RR42_RS22890 0.28 -1.6 467,166 + RR42_RS22890 0.31 -2.7 467,166 + RR42_RS22890 0.31 -2.3 467,166 + RR42_RS22890 0.31 -1.8 467,166 + RR42_RS22890 0.31 -2.5 467,170 + RR42_RS22890 0.32 -0.1 467,171 - RR42_RS22890 0.32 -1.1 467,171 - RR42_RS22890 0.32 -0.9 467,495 + RR42_RS22890 0.76 -0.8 467,495 + RR42_RS22890 0.76 -2.5 467,502 - RR42_RS22890 0.77 -2.5 467,752 + +0.7 468,372 - RR42_RS22895 0.20 -0.2 468,400 + RR42_RS22895 0.21 -3.3 468,468 + RR42_RS22895 0.24 +0.8 468,468 + RR42_RS22895 0.24 +1.0 468,468 + RR42_RS22895 0.24 -0.1 468,468 + RR42_RS22895 0.24 -0.2 468,468 + RR42_RS22895 0.24 +0.9 468,470 + RR42_RS22895 0.24 -1.3 468,470 + RR42_RS22895 0.24 +0.1 468,471 - RR42_RS22895 0.24 +0.5 468,471 - RR42_RS22895 0.24 +0.9 468,471 - RR42_RS22895 0.24 -0.2 468,574 - RR42_RS22895 0.29 +0.3 468,606 + RR42_RS22895 0.31 -2.1 468,606 + RR42_RS22895 0.31 -1.9 468,607 - RR42_RS22895 0.31 -0.0 468,630 + RR42_RS22895 0.32 -1.3
Or see this region's nucleotide sequence