Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22465

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22455 and RR42_RS22460 are separated by 146 nucleotidesRR42_RS22460 and RR42_RS22465 are separated by 67 nucleotidesRR42_RS22465 and RR42_RS22470 are separated by 173 nucleotides RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027 _RS22455 RR42_RS22460: RR42_RS22460 - ABC transporter, at 375,174 to 375,872 _RS22460 RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994 _RS22465 RR42_RS22470: RR42_RS22470 - MFS transporter, at 378,168 to 379,493 _RS22470 Position (kb) 375 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 374.970 kb on + strandat 375.026 kb on - strandat 375.050 kb on + strandat 375.101 kb on + strandat 375.101 kb on + strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.107 kb on + strandat 375.107 kb on + strandat 375.108 kb on - strandat 375.108 kb on - strandat 375.260 kb on + strand, within RR42_RS22460at 375.471 kb on + strand, within RR42_RS22460at 375.472 kb on - strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.762 kb on - strand, within RR42_RS22460at 375.847 kb on - strandat 375.847 kb on - strandat 375.860 kb on + strandat 375.861 kb on - strandat 375.875 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.888 kb on - strandat 375.888 kb on - strandat 375.925 kb on + strandat 375.925 kb on + strandat 375.933 kb on + strandat 376.065 kb on + strandat 376.193 kb on + strand, within RR42_RS22465at 376.194 kb on - strand, within RR42_RS22465at 376.634 kb on + strand, within RR42_RS22465at 376.635 kb on - strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.767 kb on - strand, within RR42_RS22465at 376.823 kb on + strand, within RR42_RS22465at 376.824 kb on - strand, within RR42_RS22465at 377.060 kb on + strand, within RR42_RS22465at 377.061 kb on - strand, within RR42_RS22465at 377.061 kb on - strand, within RR42_RS22465at 377.214 kb on - strand, within RR42_RS22465at 377.427 kb on - strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.586 kb on - strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.589 kb on - strand, within RR42_RS22465at 377.589 kb on - strand, within RR42_RS22465at 377.627 kb on + strand, within RR42_RS22465at 377.628 kb on - strand, within RR42_RS22465at 377.927 kb on + strandat 377.928 kb on - strandat 377.978 kb on + strandat 377.979 kb on - strandat 377.983 kb on - strandat 378.244 kb on + strandat 378.244 kb on + strandat 378.245 kb on - strandat 378.245 kb on - strandat 378.245 kb on - strandat 378.335 kb on + strand, within RR42_RS22470at 378.608 kb on - strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.708 kb on - strand, within RR42_RS22470at 378.721 kb on + strand, within RR42_RS22470at 378.722 kb on - strand, within RR42_RS22470at 378.934 kb on + strand, within RR42_RS22470at 378.935 kb on - strand, within RR42_RS22470

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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374,970 + +1.0
375,026 - +0.4
375,050 + +0.2
375,101 + +0.8
375,101 + +0.8
375,102 - -0.5
375,102 - +1.3
375,102 - -0.5
375,102 - +0.5
375,102 - -0.1
375,107 + +0.1
375,107 + -0.5
375,108 - -0.0
375,108 - -0.6
375,260 + RR42_RS22460 0.12 +0.2
375,471 + RR42_RS22460 0.42 -0.2
375,472 - RR42_RS22460 0.43 +1.7
375,664 + RR42_RS22460 0.70 +0.3
375,664 + RR42_RS22460 0.70 +1.1
375,664 + RR42_RS22460 0.70 -0.9
375,665 - RR42_RS22460 0.70 +1.3
375,665 - RR42_RS22460 0.70 -0.8
375,761 + RR42_RS22460 0.84 -1.7
375,761 + RR42_RS22460 0.84 +0.2
375,762 - RR42_RS22460 0.84 -1.9
375,847 - +1.4
375,847 - -1.1
375,860 + -0.0
375,861 - +0.9
375,875 + +0.3
375,887 + +0.6
375,887 + -0.4
375,887 + +1.3
375,887 + -1.9
375,888 - -1.1
375,888 - -0.9
375,925 + +1.7
375,925 + -0.3
375,933 + -2.8
376,065 + +1.5
376,193 + RR42_RS22465 0.12 -0.8
376,194 - RR42_RS22465 0.12 -1.2
376,634 + RR42_RS22465 0.34 +0.2
376,635 - RR42_RS22465 0.34 +1.1
376,766 + RR42_RS22465 0.40 +0.1
376,766 + RR42_RS22465 0.40 -0.6
376,767 - RR42_RS22465 0.40 +0.1
376,823 + RR42_RS22465 0.43 -0.6
376,824 - RR42_RS22465 0.43 +0.4
377,060 + RR42_RS22465 0.55 -1.9
377,061 - RR42_RS22465 0.55 +1.3
377,061 - RR42_RS22465 0.55 +0.6
377,214 - RR42_RS22465 0.62 +1.4
377,427 - RR42_RS22465 0.72 +0.1
377,585 + RR42_RS22465 0.80 +0.6
377,585 + RR42_RS22465 0.80 -2.9
377,585 + RR42_RS22465 0.80 -1.1
377,586 - RR42_RS22465 0.80 +0.7
377,588 + RR42_RS22465 0.80 -0.8
377,588 + RR42_RS22465 0.80 -0.2
377,588 + RR42_RS22465 0.80 -0.3
377,589 - RR42_RS22465 0.80 +1.6
377,589 - RR42_RS22465 0.80 +0.7
377,627 + RR42_RS22465 0.82 -0.8
377,628 - RR42_RS22465 0.82 +0.7
377,927 + +0.3
377,928 - +0.2
377,978 + +0.8
377,979 - +0.3
377,983 - +0.1
378,244 + +0.5
378,244 + -1.0
378,245 - +0.4
378,245 - +0.5
378,245 - +0.0
378,335 + RR42_RS22470 0.13 +0.5
378,608 - RR42_RS22470 0.33 -3.5
378,707 + RR42_RS22470 0.41 +0.5
378,707 + RR42_RS22470 0.41 +0.4
378,708 - RR42_RS22470 0.41 +0.9
378,721 + RR42_RS22470 0.42 +3.4
378,722 - RR42_RS22470 0.42 -0.6
378,934 + RR42_RS22470 0.58 -0.9
378,935 - RR42_RS22470 0.58 -0.3

Or see this region's nucleotide sequence