Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21630 and RR42_RS21635 are separated by 28 nucleotides RR42_RS21635 and RR42_RS21640 are separated by 29 nucleotides RR42_RS21640 and RR42_RS21645 overlap by 8 nucleotides RR42_RS21645 and RR42_RS21650 are separated by 43 nucleotides
RR42_RS21630: RR42_RS21630 - Asp/Glu racemase, at 182,705 to 183,457
_RS21630
RR42_RS21635: RR42_RS21635 - alpha/beta hydrolase, at 183,486 to 184,328
_RS21635
RR42_RS21640: RR42_RS21640 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 184,358 to 185,458
_RS21640
RR42_RS21645: RR42_RS21645 - N-carbamoylsarcosine amidase, at 185,451 to 186,092
_RS21645
RR42_RS21650: RR42_RS21650 - TetR family transcriptional regulator, at 186,136 to 186,873
_RS21650
Position (kb) 184
185
186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 183.383 kb on + strand at 183.383 kb on + strand at 183.452 kb on + strand at 183.665 kb on + strand, within RR42_RS21635 at 183.666 kb on - strand, within RR42_RS21635 at 183.666 kb on - strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.671 kb on + strand, within RR42_RS21635 at 183.910 kb on - strand, within RR42_RS21635 at 183.931 kb on - strand, within RR42_RS21635 at 184.365 kb on + strand at 184.581 kb on - strand, within RR42_RS21640 at 185.060 kb on + strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.108 kb on + strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.110 kb on + strand, within RR42_RS21640 at 185.110 kb on + strand, within RR42_RS21640 at 185.111 kb on - strand, within RR42_RS21640 at 185.201 kb on + strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640 at 185.393 kb on + strand at 185.518 kb on - strand at 186.090 kb on + strand at 186.243 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.319 kb on - strand, within RR42_RS21650 at 186.336 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 183,383 + +2.9 183,383 + +0.5 183,452 + -1.5 183,665 + RR42_RS21635 0.21 -2.6 183,666 - RR42_RS21635 0.21 -0.1 183,666 - RR42_RS21635 0.21 -0.5 183,669 + RR42_RS21635 0.22 -0.0 183,669 + RR42_RS21635 0.22 -0.4 183,669 + RR42_RS21635 0.22 -0.4 183,671 + RR42_RS21635 0.22 -2.1 183,910 - RR42_RS21635 0.50 -1.3 183,931 - RR42_RS21635 0.53 -0.5 184,365 + +1.4 184,581 - RR42_RS21640 0.20 +0.1 185,060 + RR42_RS21640 0.64 +0.3 185,061 - RR42_RS21640 0.64 -3.9 185,061 - RR42_RS21640 0.64 +1.1 185,061 - RR42_RS21640 0.64 -0.5 185,061 - RR42_RS21640 0.64 +0.5 185,108 + RR42_RS21640 0.68 +0.1 185,109 - RR42_RS21640 0.68 +0.5 185,109 - RR42_RS21640 0.68 -0.6 185,109 - RR42_RS21640 0.68 +0.5 185,109 - RR42_RS21640 0.68 -0.3 185,110 + RR42_RS21640 0.68 -1.7 185,110 + RR42_RS21640 0.68 +0.1 185,111 - RR42_RS21640 0.68 -1.5 185,201 + RR42_RS21640 0.77 +0.2 185,202 - RR42_RS21640 0.77 -0.2 185,202 - RR42_RS21640 0.77 +1.1 185,393 + +0.5 185,518 - -0.5 186,090 + -1.0 186,243 + RR42_RS21650 0.14 +1.2 186,318 + RR42_RS21650 0.25 -0.3 186,318 + RR42_RS21650 0.25 +0.4 186,319 - RR42_RS21650 0.25 +1.5 186,336 - RR42_RS21650 0.27 +1.3 186,366 - RR42_RS21650 0.31 -0.2 186,366 - RR42_RS21650 0.31 +0.8 186,449 + RR42_RS21650 0.42 +1.2 186,449 + RR42_RS21650 0.42 +1.9
Or see this region's nucleotide sequence