Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21355 and RR42_RS21360 overlap by 4 nucleotides RR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides RR42_RS21365 and RR42_RS21370 are separated by 52 nucleotides
RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392
_RS21355
RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228
_RS21360
RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885
_RS21365
RR42_RS21370: RR42_RS21370 - 4-aminobutyrate aminotransferase, at 123,938 to 125,200
_RS21370
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 121.411 kb on - strand at 121.803 kb on + strand, within RR42_RS21360 at 121.804 kb on - strand, within RR42_RS21360 at 122.268 kb on - strand at 122.348 kb on - strand at 122.348 kb on - strand at 122.444 kb on - strand, within RR42_RS21365 at 122.709 kb on + strand, within RR42_RS21365 at 122.710 kb on - strand, within RR42_RS21365 at 122.714 kb on - strand, within RR42_RS21365 at 123.010 kb on + strand, within RR42_RS21365 at 123.396 kb on + strand, within RR42_RS21365 at 123.814 kb on + strand at 124.061 kb on + strand at 124.061 kb on + strand at 124.062 kb on - strand at 124.062 kb on - strand at 124.064 kb on - strand at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.390 kb on - strand, within RR42_RS21370 at 124.398 kb on - strand, within RR42_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 121,411 - -0.2 121,803 + RR42_RS21360 0.49 +0.7 121,804 - RR42_RS21360 0.49 +0.4 122,268 - -0.3 122,348 - +0.6 122,348 - -0.4 122,444 - RR42_RS21365 0.12 +0.2 122,709 + RR42_RS21365 0.28 -2.8 122,710 - RR42_RS21365 0.28 +0.9 122,714 - RR42_RS21365 0.28 -0.2 123,010 + RR42_RS21365 0.47 -0.6 123,396 + RR42_RS21365 0.70 -1.5 123,814 + +1.1 124,061 + +1.1 124,061 + +0.8 124,062 - -1.0 124,062 - -0.4 124,064 - +3.2 124,190 + RR42_RS21370 0.20 +0.8 124,190 + RR42_RS21370 0.20 +1.6 124,190 + RR42_RS21370 0.20 +0.9 124,190 + RR42_RS21370 0.20 -1.8 124,191 - RR42_RS21370 0.20 +1.1 124,191 - RR42_RS21370 0.20 +0.5 124,191 - RR42_RS21370 0.20 +0.2 124,191 - RR42_RS21370 0.20 -0.4 124,191 - RR42_RS21370 0.20 +1.1 124,390 - RR42_RS21370 0.36 +0.3 124,398 - RR42_RS21370 0.36 -0.8
Or see this region's nucleotide sequence