Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21355

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21350 and RR42_RS21355 are separated by 79 nucleotidesRR42_RS21355 and RR42_RS21360 overlap by 4 nucleotidesRR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides RR42_RS21350: RR42_RS21350 - peptide ABC transporter substrate-binding protein, at 118,746 to 120,308 _RS21350 RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392 _RS21355 RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228 _RS21360 RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885 _RS21365 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1at 119.413 kb on - strand, within RR42_RS21350at 119.413 kb on - strand, within RR42_RS21350at 119.811 kb on + strand, within RR42_RS21350at 119.839 kb on - strand, within RR42_RS21350at 119.869 kb on - strand, within RR42_RS21350at 119.979 kb on + strand, within RR42_RS21350at 119.980 kb on - strand, within RR42_RS21350at 119.985 kb on + strand, within RR42_RS21350at 119.986 kb on - strand, within RR42_RS21350at 120.025 kb on - strand, within RR42_RS21350at 120.025 kb on - strand, within RR42_RS21350at 120.150 kb on + strand, within RR42_RS21350at 120.151 kb on - strand, within RR42_RS21350at 120.311 kb on - strandat 120.311 kb on - strandat 120.326 kb on + strandat 120.327 kb on - strandat 120.640 kb on + strand, within RR42_RS21355at 120.830 kb on - strand, within RR42_RS21355at 121.016 kb on - strand, within RR42_RS21355at 121.016 kb on - strand, within RR42_RS21355at 121.150 kb on - strand, within RR42_RS21355at 121.411 kb on - strandat 121.803 kb on + strand, within RR42_RS21360at 121.804 kb on - strand, within RR42_RS21360at 122.268 kb on - strandat 122.348 kb on - strandat 122.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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119,413 - RR42_RS21350 0.43 +0.8
119,413 - RR42_RS21350 0.43 -0.9
119,811 + RR42_RS21350 0.68 -0.7
119,839 - RR42_RS21350 0.70 +0.3
119,869 - RR42_RS21350 0.72 -1.5
119,979 + RR42_RS21350 0.79 +0.1
119,980 - RR42_RS21350 0.79 -0.2
119,985 + RR42_RS21350 0.79 +0.6
119,986 - RR42_RS21350 0.79 +1.1
120,025 - RR42_RS21350 0.82 -0.5
120,025 - RR42_RS21350 0.82 -2.2
120,150 + RR42_RS21350 0.90 +0.7
120,151 - RR42_RS21350 0.90 -0.7
120,311 - -1.4
120,311 - -0.5
120,326 + -1.9
120,327 - +0.4
120,640 + RR42_RS21355 0.25 +0.2
120,830 - RR42_RS21355 0.44 -2.7
121,016 - RR42_RS21355 0.62 -1.2
121,016 - RR42_RS21355 0.62 -0.0
121,150 - RR42_RS21355 0.76 +0.1
121,411 - -0.2
121,803 + RR42_RS21360 0.49 +0.7
121,804 - RR42_RS21360 0.49 +0.4
122,268 - -0.3
122,348 - +0.6
122,348 - -0.4

Or see this region's nucleotide sequence