Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21320

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21315 and RR42_RS21320 are separated by 8 nucleotidesRR42_RS21320 and RR42_RS21325 are separated by 24 nucleotidesRR42_RS21325 and RR42_RS21330 are separated by 101 nucleotides RR42_RS21315: RR42_RS21315 - ethanolamine permease, at 108,691 to 110,139 _RS21315 RR42_RS21320: RR42_RS21320 - ethanolamine ammonia-lyase, at 110,148 to 111,530 _RS21320 RR42_RS21325: RR42_RS21325 - ethanolamine ammonia-lyase, at 111,555 to 112,367 _RS21325 RR42_RS21330: RR42_RS21330 - phosphoserine phosphatase, at 112,469 to 113,758 _RS21330 Position (kb) 110 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 109.149 kb on + strand, within RR42_RS21315at 109.150 kb on - strand, within RR42_RS21315at 109.557 kb on + strand, within RR42_RS21315at 109.637 kb on - strand, within RR42_RS21315at 109.765 kb on + strand, within RR42_RS21315at 109.765 kb on + strand, within RR42_RS21315at 109.765 kb on + strand, within RR42_RS21315at 109.766 kb on - strand, within RR42_RS21315at 109.766 kb on - strand, within RR42_RS21315at 109.766 kb on - strand, within RR42_RS21315at 109.766 kb on - strand, within RR42_RS21315at 109.849 kb on + strand, within RR42_RS21315at 109.850 kb on - strand, within RR42_RS21315at 109.850 kb on - strand, within RR42_RS21315at 109.850 kb on - strand, within RR42_RS21315at 109.927 kb on + strand, within RR42_RS21315at 110.014 kb on + strandat 110.014 kb on + strandat 110.015 kb on - strandat 110.015 kb on - strandat 110.048 kb on - strandat 110.048 kb on - strandat 110.048 kb on - strandat 110.241 kb on + strandat 110.242 kb on - strandat 111.003 kb on + strand, within RR42_RS21320at 111.003 kb on + strand, within RR42_RS21320at 111.003 kb on + strand, within RR42_RS21320at 111.004 kb on - strand, within RR42_RS21320at 111.150 kb on + strand, within RR42_RS21320at 111.151 kb on - strand, within RR42_RS21320at 111.151 kb on - strand, within RR42_RS21320at 111.156 kb on + strand, within RR42_RS21320at 111.157 kb on - strand, within RR42_RS21320at 111.275 kb on + strand, within RR42_RS21320at 111.276 kb on - strand, within RR42_RS21320at 111.360 kb on + strand, within RR42_RS21320at 111.391 kb on - strand, within RR42_RS21320at 111.407 kb on - strandat 111.529 kb on - strandat 111.801 kb on + strand, within RR42_RS21325at 111.801 kb on + strand, within RR42_RS21325at 111.802 kb on - strand, within RR42_RS21325at 112.122 kb on + strand, within RR42_RS21325at 112.184 kb on - strand, within RR42_RS21325at 112.352 kb on + strandat 112.495 kb on - strandat 112.495 kb on - strandat 112.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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109,149 + RR42_RS21315 0.32 +0.3
109,150 - RR42_RS21315 0.32 -0.9
109,557 + RR42_RS21315 0.60 -0.3
109,637 - RR42_RS21315 0.65 -0.7
109,765 + RR42_RS21315 0.74 -0.2
109,765 + RR42_RS21315 0.74 +0.3
109,765 + RR42_RS21315 0.74 -1.4
109,766 - RR42_RS21315 0.74 -0.5
109,766 - RR42_RS21315 0.74 -0.2
109,766 - RR42_RS21315 0.74 -1.6
109,766 - RR42_RS21315 0.74 -0.0
109,849 + RR42_RS21315 0.80 -0.1
109,850 - RR42_RS21315 0.80 -0.7
109,850 - RR42_RS21315 0.80 -1.7
109,850 - RR42_RS21315 0.80 +2.1
109,927 + RR42_RS21315 0.85 -0.5
110,014 + -0.2
110,014 + -2.6
110,015 - -0.2
110,015 - +0.4
110,048 - -0.9
110,048 - -0.2
110,048 - +0.5
110,241 + +0.4
110,242 - +0.8
111,003 + RR42_RS21320 0.62 +0.5
111,003 + RR42_RS21320 0.62 -0.1
111,003 + RR42_RS21320 0.62 -1.1
111,004 - RR42_RS21320 0.62 -3.1
111,150 + RR42_RS21320 0.72 -0.7
111,151 - RR42_RS21320 0.73 -0.7
111,151 - RR42_RS21320 0.73 -2.0
111,156 + RR42_RS21320 0.73 +1.0
111,157 - RR42_RS21320 0.73 +0.5
111,275 + RR42_RS21320 0.81 -3.8
111,276 - RR42_RS21320 0.82 -0.7
111,360 + RR42_RS21320 0.88 -0.1
111,391 - RR42_RS21320 0.90 +0.4
111,407 - +0.3
111,529 - +0.3
111,801 + RR42_RS21325 0.30 +0.3
111,801 + RR42_RS21325 0.30 +0.2
111,802 - RR42_RS21325 0.30 -1.0
112,122 + RR42_RS21325 0.70 +0.8
112,184 - RR42_RS21325 0.77 -0.3
112,352 + +0.1
112,495 - -0.6
112,495 - -0.9
112,495 - -0.5

Or see this region's nucleotide sequence