Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21200 and RR42_RS21205 are separated by 357 nucleotides RR42_RS21205 and RR42_RS21210 are separated by 856 nucleotides
RR42_RS21200: RR42_RS21200 - membrane protein, at 79,901 to 80,545
_RS21200
RR42_RS21205: RR42_RS21205 - 2-isopropylmalate synthase, at 80,903 to 82,600
_RS21205
RR42_RS21210: RR42_RS21210 - hypothetical protein, at 83,457 to 84,767
_RS21210
Position (kb)
80
81
82
83 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 80.043 kb on + strand, within RR42_RS21200 at 80.044 kb on - strand, within RR42_RS21200 at 80.084 kb on - strand, within RR42_RS21200 at 80.154 kb on + strand, within RR42_RS21200 at 80.154 kb on + strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.188 kb on - strand, within RR42_RS21200 at 80.247 kb on + strand, within RR42_RS21200 at 80.311 kb on - strand, within RR42_RS21200 at 80.410 kb on - strand, within RR42_RS21200 at 80.529 kb on + strand at 80.530 kb on - strand at 80.530 kb on - strand at 80.727 kb on - strand at 80.742 kb on + strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.058 kb on - strand at 81.106 kb on - strand, within RR42_RS21205 at 81.272 kb on - strand, within RR42_RS21205 at 81.273 kb on + strand, within RR42_RS21205 at 81.273 kb on + strand, within RR42_RS21205 at 81.274 kb on - strand, within RR42_RS21205 at 81.274 kb on - strand, within RR42_RS21205 at 81.321 kb on + strand, within RR42_RS21205 at 81.321 kb on + strand, within RR42_RS21205 at 81.321 kb on + strand, within RR42_RS21205 at 81.322 kb on - strand, within RR42_RS21205 at 81.409 kb on + strand, within RR42_RS21205 at 81.410 kb on - strand, within RR42_RS21205 at 81.410 kb on - strand, within RR42_RS21205 at 81.411 kb on + strand, within RR42_RS21205 at 81.411 kb on + strand, within RR42_RS21205 at 81.411 kb on + strand, within RR42_RS21205 at 81.412 kb on - strand, within RR42_RS21205 at 81.412 kb on - strand, within RR42_RS21205 at 81.438 kb on + strand, within RR42_RS21205 at 81.438 kb on + strand, within RR42_RS21205 at 81.470 kb on + strand, within RR42_RS21205 at 81.489 kb on + strand, within RR42_RS21205 at 81.525 kb on + strand, within RR42_RS21205 at 81.526 kb on - strand, within RR42_RS21205 at 81.627 kb on + strand, within RR42_RS21205 at 81.627 kb on + strand, within RR42_RS21205 at 81.627 kb on + strand, within RR42_RS21205 at 81.627 kb on + strand, within RR42_RS21205 at 81.628 kb on - strand, within RR42_RS21205 at 81.628 kb on - strand, within RR42_RS21205 at 81.729 kb on + strand, within RR42_RS21205 at 81.881 kb on + strand, within RR42_RS21205 at 81.882 kb on - strand, within RR42_RS21205 at 81.882 kb on - strand, within RR42_RS21205 at 81.882 kb on - strand, within RR42_RS21205 at 81.882 kb on - strand, within RR42_RS21205 at 81.940 kb on + strand, within RR42_RS21205 at 81.940 kb on + strand, within RR42_RS21205 at 82.081 kb on - strand, within RR42_RS21205 at 82.086 kb on + strand, within RR42_RS21205 at 82.086 kb on + strand, within RR42_RS21205 at 82.087 kb on - strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.218 kb on + strand, within RR42_RS21205 at 82.219 kb on - strand, within RR42_RS21205 at 82.219 kb on - strand, within RR42_RS21205 at 82.219 kb on - strand, within RR42_RS21205 at 82.219 kb on - strand, within RR42_RS21205 at 82.271 kb on + strand, within RR42_RS21205 at 82.553 kb on - strand at 82.553 kb on - strand at 82.556 kb on + strand at 82.556 kb on + strand at 82.556 kb on + strand at 82.557 kb on - strand at 82.557 kb on - strand at 82.557 kb on - strand at 82.557 kb on - strand at 82.764 kb on + strand at 82.764 kb on + strand at 82.765 kb on - strand at 82.765 kb on - strand at 82.772 kb on - strand at 82.791 kb on + strand at 82.792 kb on - strand at 82.797 kb on + strand at 82.797 kb on + strand at 82.798 kb on - strand at 82.798 kb on - strand at 83.009 kb on - strand at 83.017 kb on + strand at 83.017 kb on + strand at 83.017 kb on + strand at 83.018 kb on - strand at 83.018 kb on - strand at 83.040 kb on + strand at 83.041 kb on - strand at 83.041 kb on - strand at 83.041 kb on - strand at 83.092 kb on + strand at 83.093 kb on - strand at 83.217 kb on + strand at 83.217 kb on + strand at 83.218 kb on - strand at 83.218 kb on - strand at 83.218 kb on - strand at 83.218 kb on - strand at 83.218 kb on - strand at 83.221 kb on + strand at 83.221 kb on + strand at 83.221 kb on + strand at 83.221 kb on + strand at 83.222 kb on - strand at 83.222 kb on - strand at 83.222 kb on - strand at 83.222 kb on - strand at 83.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 80,043 + RR42_RS21200 0.22 -0.1 80,044 - RR42_RS21200 0.22 -0.5 80,084 - RR42_RS21200 0.28 -0.2 80,154 + RR42_RS21200 0.39 +0.1 80,154 + RR42_RS21200 0.39 -2.1 80,155 - RR42_RS21200 0.39 -0.1 80,155 - RR42_RS21200 0.39 +0.9 80,155 - RR42_RS21200 0.39 -2.1 80,188 - RR42_RS21200 0.44 +1.8 80,247 + RR42_RS21200 0.54 +0.8 80,311 - RR42_RS21200 0.64 -0.6 80,410 - RR42_RS21200 0.79 -0.4 80,529 + +0.2 80,530 - +1.5 80,530 - +0.3 80,727 - -0.1 80,742 + +0.8 81,057 + +0.1 81,057 + -1.0 81,057 + +0.9 81,058 - -0.1 81,106 - RR42_RS21205 0.12 -0.2 81,272 - RR42_RS21205 0.22 +0.9 81,273 + RR42_RS21205 0.22 -0.2 81,273 + RR42_RS21205 0.22 -0.9 81,274 - RR42_RS21205 0.22 +0.6 81,274 - RR42_RS21205 0.22 +0.6 81,321 + RR42_RS21205 0.25 -2.0 81,321 + RR42_RS21205 0.25 +0.7 81,321 + RR42_RS21205 0.25 +0.1 81,322 - RR42_RS21205 0.25 -0.5 81,409 + RR42_RS21205 0.30 -2.4 81,410 - RR42_RS21205 0.30 +0.4 81,410 - RR42_RS21205 0.30 -0.1 81,411 + RR42_RS21205 0.30 +1.3 81,411 + RR42_RS21205 0.30 -0.3 81,411 + RR42_RS21205 0.30 -2.4 81,412 - RR42_RS21205 0.30 -0.6 81,412 - RR42_RS21205 0.30 +1.5 81,438 + RR42_RS21205 0.32 -1.7 81,438 + RR42_RS21205 0.32 -1.1 81,470 + RR42_RS21205 0.33 -0.1 81,489 + RR42_RS21205 0.35 -1.9 81,525 + RR42_RS21205 0.37 +0.9 81,526 - RR42_RS21205 0.37 -0.5 81,627 + RR42_RS21205 0.43 -0.0 81,627 + RR42_RS21205 0.43 +0.5 81,627 + RR42_RS21205 0.43 -1.4 81,627 + RR42_RS21205 0.43 +0.1 81,628 - RR42_RS21205 0.43 +0.6 81,628 - RR42_RS21205 0.43 -0.9 81,729 + RR42_RS21205 0.49 -0.4 81,881 + RR42_RS21205 0.58 +0.5 81,882 - RR42_RS21205 0.58 -2.1 81,882 - RR42_RS21205 0.58 -0.8 81,882 - RR42_RS21205 0.58 -0.6 81,882 - RR42_RS21205 0.58 +0.4 81,940 + RR42_RS21205 0.61 -1.9 81,940 + RR42_RS21205 0.61 -2.8 82,081 - RR42_RS21205 0.69 -1.0 82,086 + RR42_RS21205 0.70 +0.1 82,086 + RR42_RS21205 0.70 +0.9 82,087 - RR42_RS21205 0.70 +2.6 82,218 + RR42_RS21205 0.77 -0.5 82,218 + RR42_RS21205 0.77 -0.6 82,218 + RR42_RS21205 0.77 -2.6 82,218 + RR42_RS21205 0.77 -0.2 82,218 + RR42_RS21205 0.77 +0.2 82,218 + RR42_RS21205 0.77 -2.6 82,219 - RR42_RS21205 0.78 +1.5 82,219 - RR42_RS21205 0.78 -0.1 82,219 - RR42_RS21205 0.78 -1.1 82,219 - RR42_RS21205 0.78 -1.5 82,271 + RR42_RS21205 0.81 +0.6 82,553 - -1.5 82,553 - +1.0 82,556 + -2.6 82,556 + +1.1 82,556 + +1.3 82,557 - +1.1 82,557 - -2.0 82,557 - -0.1 82,557 - -1.1 82,764 + +0.7 82,764 + +0.1 82,765 - +3.1 82,765 - +0.2 82,772 - -0.1 82,791 + -0.2 82,792 - -1.5 82,797 + +0.8 82,797 + +3.9 82,798 - +0.7 82,798 - +0.5 83,009 - +0.4 83,017 + -1.5 83,017 + +3.8 83,017 + +0.2 83,018 - +1.0 83,018 - +0.7 83,040 + -2.9 83,041 - +0.8 83,041 - -0.1 83,041 - -0.2 83,092 + -1.1 83,093 - +0.4 83,217 + -0.5 83,217 + -0.1 83,218 - -0.2 83,218 - +0.1 83,218 - -0.1 83,218 - -1.1 83,218 - -0.1 83,221 + -0.9 83,221 + +0.7 83,221 + +1.0 83,221 + -0.4 83,222 - -1.7 83,222 - +0.5 83,222 - +0.4 83,222 - +0.1 83,252 - -0.4
Or see this region's nucleotide sequence