Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20225

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
4,373,353	+				-2.3
4,373,353	+				-0.5
4,373,353	+				-0.1
4,373,354	-				+0.8
4,373,354	-				+1.8
4,373,354	-				-0.1
4,373,354	-				+0.8
4,373,354	-				-0.4
4,373,377	+				+0.4
4,373,378	-				-1.1
4,373,378	-				+0.3
4,373,464	+		RR42_RS20220	0.13	-0.6
4,373,464	+		RR42_RS20220	0.13	+1.6
4,373,464	+		RR42_RS20220	0.13	+2.1
4,373,465	-		RR42_RS20220	0.13	-0.4
4,373,548	+		RR42_RS20220	0.23	-0.7
4,373,548	+		RR42_RS20220	0.23	-0.8
4,373,548	+		RR42_RS20220	0.23	-0.8
4,373,548	+		RR42_RS20220	0.23	-3.2
4,373,548	+		RR42_RS20220	0.23	+0.9
4,373,548	+		RR42_RS20220	0.23	+0.4
4,373,549	-		RR42_RS20220	0.23	+0.7
4,373,549	-		RR42_RS20220	0.23	-1.3
4,373,549	-		RR42_RS20220	0.23	+0.6
4,373,549	-		RR42_RS20220	0.23	-0.3
4,373,570	+		RR42_RS20220	0.25	-1.0
4,373,570	+		RR42_RS20220	0.25	-2.0
4,373,570	+		RR42_RS20220	0.25	+2.8
4,373,570	+		RR42_RS20220	0.25	+0.3
4,373,570	+		RR42_RS20220	0.25	-0.4
4,373,570	+		RR42_RS20220	0.25	-0.4
4,373,570	+		RR42_RS20220	0.25	-0.3
4,373,570	+		RR42_RS20220	0.25	-1.0
4,373,571	-		RR42_RS20220	0.25	-0.5
4,373,571	-		RR42_RS20220	0.25	+0.4
4,373,571	-		RR42_RS20220	0.25	-0.8
4,373,571	-		RR42_RS20220	0.25	-1.9
4,373,571	-		RR42_RS20220	0.25	-3.1
4,373,571	-		RR42_RS20220	0.25	-0.5
4,373,695	+		RR42_RS20220	0.40	-1.6
4,373,696	-		RR42_RS20220	0.40	+0.2
4,373,752	+		RR42_RS20220	0.46	-2.5
4,373,752	+		RR42_RS20220	0.46	-2.5
4,373,752	+		RR42_RS20220	0.46	+1.2
4,373,753	-		RR42_RS20220	0.47	+0.3
4,373,753	-		RR42_RS20220	0.47	-0.7
4,373,798	-		RR42_RS20220	0.52	+0.2
4,373,798	-		RR42_RS20220	0.52	+0.2
4,373,800	+		RR42_RS20220	0.52	-1.2
4,373,801	-		RR42_RS20220	0.52	+0.8
4,373,801	-		RR42_RS20220	0.52	-0.8
4,373,801	-		RR42_RS20220	0.52	+1.5
4,373,801	-		RR42_RS20220	0.52	-1.1
4,373,801	-		RR42_RS20220	0.52	+1.0
4,373,801	-		RR42_RS20220	0.52	+1.4
4,373,821	-		RR42_RS20220	0.54	+1.9
4,373,848	+		RR42_RS20220	0.58	-0.2
4,373,848	+		RR42_RS20220	0.58	-0.3
4,373,848	+		RR42_RS20220	0.58	+0.0
4,373,848	+		RR42_RS20220	0.58	-0.8
4,373,848	+		RR42_RS20220	0.58	+2.4
4,373,848	+		RR42_RS20220	0.58	+0.8
4,373,848	+		RR42_RS20220	0.58	+1.6
4,373,849	-		RR42_RS20220	0.58	-0.1
4,373,849	-		RR42_RS20220	0.58	+1.4
4,373,849	-		RR42_RS20220	0.58	+0.3
4,373,989	+		RR42_RS20220	0.74	-0.4
4,373,989	+		RR42_RS20220	0.74	+0.2
4,373,990	-		RR42_RS20220	0.74	+0.1
4,374,006	-		RR42_RS20220	0.76	-0.6
4,374,134	+				+0.5
4,374,232	+				+0.6
4,374,258	+				-1.6
4,374,259	-				-0.9
4,374,311	+				-2.7
4,374,460	+		RR42_RS20225	0.24	-0.5
4,374,461	-		RR42_RS20225	0.24	+0.0
4,374,463	-		RR42_RS20225	0.25	+1.2
4,374,477	+		RR42_RS20225	0.26	-0.1
4,374,477	+		RR42_RS20225	0.26	-0.3
4,374,478	-		RR42_RS20225	0.26	-0.1
4,374,566	-		RR42_RS20225	0.35	-0.1
4,374,639	+		RR42_RS20225	0.42	+0.6
4,374,640	-		RR42_RS20225	0.42	-0.0
4,374,640	-		RR42_RS20225	0.42	+2.5
4,374,732	+		RR42_RS20225	0.52	+1.5
4,374,732	+		RR42_RS20225	0.52	+0.6
4,374,732	+		RR42_RS20225	0.52	-0.3
4,374,732	+		RR42_RS20225	0.52	+0.6
4,374,733	-		RR42_RS20225	0.52	+0.3
4,374,733	-		RR42_RS20225	0.52	-0.7
4,374,864	+		RR42_RS20225	0.65	+0.9
4,374,865	-		RR42_RS20225	0.65	+0.1
4,374,879	+		RR42_RS20225	0.66	+0.5
4,374,931	-		RR42_RS20225	0.72	-0.0
4,374,931	-		RR42_RS20225	0.72	-0.2
4,374,931	-		RR42_RS20225	0.72	+0.9
4,375,113	+		RR42_RS20225	0.90	+0.2
4,375,114	-				-0.9
4,375,114	-				+0.6
4,375,236	-				-0.6
4,375,236	-				-0.6
4,375,236	-				-0.6
4,375,286	+				-0.8
4,375,286	+				-0.2
4,375,286	+				+0.3
4,375,286	+				+1.8
4,375,287	-				-2.7
4,375,287	-				-2.6
4,375,288	+				+0.2
4,375,288	+				-0.1
4,375,660	+		RR42_RS20230	0.34	-0.1
4,375,661	-		RR42_RS20230	0.34	-1.0
4,375,661	-		RR42_RS20230	0.34	-0.1
4,375,661	-		RR42_RS20230	0.34	+1.0
4,375,818	+		RR42_RS20230	0.50	-0.5
4,375,819	-		RR42_RS20230	0.51	+1.4
4,375,929	+		RR42_RS20230	0.62	+1.2
4,375,930	-		RR42_RS20230	0.62	+1.8
4,375,930	-		RR42_RS20230	0.62	+1.3
4,375,966	+		RR42_RS20230	0.66	-0.0
4,375,966	+		RR42_RS20230	0.66	+0.5
4,375,968	+		RR42_RS20230	0.66	+0.7
4,375,969	-		RR42_RS20230	0.66	-0.1
4,375,969	-		RR42_RS20230	0.66	+0.2
4,375,969	-		RR42_RS20230	0.66	-0.1
4,376,055	-		RR42_RS20230	0.76	-0.8