Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20060 and RR42_RS20065 are separated by 102 nucleotides RR42_RS20065 and RR42_RS20070 are separated by 101 nucleotides
RR42_RS20060: RR42_RS20060 - glycine cleavage system protein T, at 4,334,296 to 4,335,435
_RS20060
RR42_RS20065: RR42_RS20065 - glycine cleavage system protein H, at 4,335,538 to 4,335,918
_RS20065
RR42_RS20070: RR42_RS20070 - glycine dehydrogenase, at 4,336,020 to 4,338,941
_RS20070
Position (kb) 4335
4336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4334.551 kb on + strand, within RR42_RS20060 at 4334.551 kb on + strand, within RR42_RS20060 at 4334.551 kb on + strand, within RR42_RS20060 at 4334.552 kb on - strand, within RR42_RS20060 at 4334.552 kb on - strand, within RR42_RS20060 at 4334.661 kb on + strand, within RR42_RS20060 at 4334.661 kb on + strand, within RR42_RS20060 at 4334.662 kb on - strand, within RR42_RS20060 at 4334.697 kb on + strand, within RR42_RS20060 at 4334.698 kb on - strand, within RR42_RS20060 at 4334.908 kb on - strand, within RR42_RS20060 at 4335.047 kb on - strand, within RR42_RS20060 at 4335.394 kb on - strand at 4335.562 kb on + strand at 4335.562 kb on + strand at 4335.563 kb on - strand at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.746 kb on - strand, within RR42_RS20065 at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.896 kb on - strand at 4335.897 kb on + strand at 4335.897 kb on + strand at 4335.897 kb on + strand at 4336.330 kb on - strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.390 kb on - strand, within RR42_RS20070 at 4336.399 kb on - strand, within RR42_RS20070 at 4336.581 kb on + strand, within RR42_RS20070 at 4336.581 kb on + strand, within RR42_RS20070 at 4336.582 kb on - strand, within RR42_RS20070 at 4336.621 kb on + strand, within RR42_RS20070 at 4336.914 kb on + strand, within RR42_RS20070 at 4336.915 kb on - strand, within RR42_RS20070 at 4336.915 kb on - strand, within RR42_RS20070
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 4,334,551 + RR42_RS20060 0.22 +0.7 4,334,551 + RR42_RS20060 0.22 +0.6 4,334,551 + RR42_RS20060 0.22 +0.7 4,334,552 - RR42_RS20060 0.22 +1.9 4,334,552 - RR42_RS20060 0.22 +1.4 4,334,661 + RR42_RS20060 0.32 +1.2 4,334,661 + RR42_RS20060 0.32 +1.4 4,334,662 - RR42_RS20060 0.32 -0.1 4,334,697 + RR42_RS20060 0.35 -0.0 4,334,698 - RR42_RS20060 0.35 -0.1 4,334,908 - RR42_RS20060 0.54 -0.8 4,335,047 - RR42_RS20060 0.66 +1.6 4,335,394 - +1.1 4,335,562 + -0.1 4,335,562 + +0.5 4,335,563 - +1.2 4,335,745 + RR42_RS20065 0.54 +1.0 4,335,745 + RR42_RS20065 0.54 +1.8 4,335,745 + RR42_RS20065 0.54 -0.6 4,335,745 + RR42_RS20065 0.54 -2.8 4,335,745 + RR42_RS20065 0.54 +0.8 4,335,746 - RR42_RS20065 0.55 -0.4 4,335,895 + +1.0 4,335,895 + +0.4 4,335,895 + +0.4 4,335,895 + +1.2 4,335,896 - +0.7 4,335,897 + +1.5 4,335,897 + +0.7 4,335,897 + -1.1 4,336,330 - RR42_RS20070 0.11 +0.6 4,336,332 + RR42_RS20070 0.11 -1.1 4,336,332 + RR42_RS20070 0.11 +0.2 4,336,332 + RR42_RS20070 0.11 -0.0 4,336,332 + RR42_RS20070 0.11 +0.3 4,336,332 + RR42_RS20070 0.11 -3.3 4,336,332 + RR42_RS20070 0.11 -1.1 4,336,333 - RR42_RS20070 0.11 +0.4 4,336,333 - RR42_RS20070 0.11 -1.1 4,336,333 - RR42_RS20070 0.11 -0.4 4,336,390 - RR42_RS20070 0.13 +0.8 4,336,399 - RR42_RS20070 0.13 +0.9 4,336,581 + RR42_RS20070 0.19 +0.6 4,336,581 + RR42_RS20070 0.19 -2.4 4,336,582 - RR42_RS20070 0.19 +1.1 4,336,621 + RR42_RS20070 0.21 +0.5 4,336,914 + RR42_RS20070 0.31 +0.1 4,336,915 - RR42_RS20070 0.31 -0.3 4,336,915 - RR42_RS20070 0.31 +0.1
Or see this region's nucleotide sequence