Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19870 and RR42_RS19875 are separated by 101 nucleotides RR42_RS19875 and RR42_RS19880 are separated by 247 nucleotides
RR42_RS19870: RR42_RS19870 - pyruvate kinase, at 4,290,002 to 4,291,480
_RS19870
RR42_RS19875: RR42_RS19875 - metalloprotease, at 4,291,582 to 4,292,475
_RS19875
RR42_RS19880: RR42_RS19880 - hypothetical protein, at 4,292,723 to 4,292,950
_RS19880
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4290.899 kb on + strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4291.128 kb on - strand, within RR42_RS19870 at 4291.128 kb on - strand, within RR42_RS19870 at 4291.323 kb on - strand, within RR42_RS19870 at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.520 kb on - strand at 4291.567 kb on + strand at 4291.567 kb on + strand at 4291.568 kb on - strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.617 kb on - strand at 4291.717 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.888 kb on - strand, within RR42_RS19875 at 4291.915 kb on + strand, within RR42_RS19875 at 4291.996 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.357 kb on - strand, within RR42_RS19875 at 4292.543 kb on - strand at 4292.575 kb on + strand at 4292.575 kb on + strand at 4292.595 kb on + strand at 4292.658 kb on + strand at 4292.855 kb on + strand, within RR42_RS19880 at 4292.872 kb on - strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.012 kb on - strand at 4293.044 kb on + strand at 4293.044 kb on + strand at 4293.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 4,290,899 + RR42_RS19870 0.61 -0.0 4,290,900 - RR42_RS19870 0.61 +1.6 4,290,900 - RR42_RS19870 0.61 +0.4 4,290,900 - RR42_RS19870 0.61 +0.1 4,291,128 - RR42_RS19870 0.76 -0.7 4,291,128 - RR42_RS19870 0.76 -1.0 4,291,323 - RR42_RS19870 0.89 -2.5 4,291,517 + -0.8 4,291,517 + -0.3 4,291,517 + -0.6 4,291,517 + -1.2 4,291,518 - -1.4 4,291,518 - +0.5 4,291,518 - -0.1 4,291,518 - -0.7 4,291,520 - -1.3 4,291,567 + +0.2 4,291,567 + +0.6 4,291,568 - -2.4 4,291,616 + -0.2 4,291,616 + +1.8 4,291,616 + -1.2 4,291,616 + +2.2 4,291,617 - +0.1 4,291,717 + RR42_RS19875 0.15 -0.9 4,291,887 + RR42_RS19875 0.34 +0.6 4,291,887 + RR42_RS19875 0.34 +1.5 4,291,887 + RR42_RS19875 0.34 +3.5 4,291,888 - RR42_RS19875 0.34 +1.5 4,291,915 + RR42_RS19875 0.37 -1.8 4,291,996 + RR42_RS19875 0.46 -1.4 4,292,020 + RR42_RS19875 0.49 -2.9 4,292,020 + RR42_RS19875 0.49 -2.7 4,292,020 + RR42_RS19875 0.49 -0.4 4,292,021 - RR42_RS19875 0.49 +0.8 4,292,021 - RR42_RS19875 0.49 +1.4 4,292,089 + RR42_RS19875 0.57 -2.4 4,292,089 + RR42_RS19875 0.57 -2.2 4,292,089 + RR42_RS19875 0.57 +2.2 4,292,089 + RR42_RS19875 0.57 +0.0 4,292,089 + RR42_RS19875 0.57 -0.8 4,292,090 - RR42_RS19875 0.57 +0.4 4,292,090 - RR42_RS19875 0.57 +0.9 4,292,090 - RR42_RS19875 0.57 -0.7 4,292,356 + RR42_RS19875 0.87 -2.7 4,292,356 + RR42_RS19875 0.87 +0.4 4,292,357 - RR42_RS19875 0.87 +0.1 4,292,543 - +0.2 4,292,575 + +0.9 4,292,575 + +0.2 4,292,595 + -2.9 4,292,658 + +0.9 4,292,855 + RR42_RS19880 0.58 +0.2 4,292,872 - RR42_RS19880 0.65 +0.2 4,292,873 + RR42_RS19880 0.66 +0.2 4,292,873 + RR42_RS19880 0.66 +1.0 4,292,873 + RR42_RS19880 0.66 -0.4 4,292,874 - RR42_RS19880 0.66 -0.8 4,292,874 - RR42_RS19880 0.66 +0.2 4,293,011 + +1.1 4,293,011 + +0.6 4,293,011 + -1.6 4,293,011 + +1.5 4,293,011 + -0.0 4,293,012 - -0.4 4,293,044 + -0.0 4,293,044 + -0.4 4,293,194 + +0.5
Or see this region's nucleotide sequence