Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19120

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19110 and RR42_RS19115 are separated by 117 nucleotidesRR42_RS19115 and RR42_RS19120 are separated by 159 nucleotidesRR42_RS19120 and RR42_RS19125 are separated by 161 nucleotides RR42_RS19110: RR42_RS19110 - thiol:disulfide interchange protein, at 4,141,210 to 4,143,153 _RS19110 RR42_RS19115: RR42_RS19115 - cation tolerance protein CutA, at 4,143,271 to 4,143,615 _RS19115 RR42_RS19120: RR42_RS19120 - 50S ribosomal protein L17, at 4,143,775 to 4,144,170 _RS19120 RR42_RS19125: RR42_RS19125 - DNA-directed RNA polymerase subunit alpha, at 4,144,332 to 4,145,312 _RS19125 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4143.182 kb on - strandat 4143.230 kb on - strandat 4143.230 kb on - strandat 4143.230 kb on - strandat 4143.267 kb on - strandat 4143.273 kb on - strandat 4143.381 kb on - strand, within RR42_RS19115at 4143.419 kb on + strand, within RR42_RS19115at 4143.420 kb on - strand, within RR42_RS19115at 4143.489 kb on - strand, within RR42_RS19115at 4143.489 kb on - strand, within RR42_RS19115at 4143.697 kb on + strandat 4143.697 kb on + strandat 4143.698 kb on - strandat 4143.698 kb on - strandat 4143.698 kb on - strandat 4143.713 kb on + strandat 4143.714 kb on - strandat 4143.714 kb on - strandat 4143.714 kb on - strandat 4144.334 kb on - strandat 4144.334 kb on - strandat 4144.334 kb on - strandat 4144.334 kb on - strandat 4144.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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4,143,182 - +0.6
4,143,230 - +0.1
4,143,230 - -0.5
4,143,230 - +1.0
4,143,267 - +1.0
4,143,273 - -0.3
4,143,381 - RR42_RS19115 0.32 -0.0
4,143,419 + RR42_RS19115 0.43 +2.5
4,143,420 - RR42_RS19115 0.43 +0.4
4,143,489 - RR42_RS19115 0.63 +0.6
4,143,489 - RR42_RS19115 0.63 -0.9
4,143,697 + +1.2
4,143,697 + +1.1
4,143,698 - -0.3
4,143,698 - -0.2
4,143,698 - -2.0
4,143,713 + -2.5
4,143,714 - +0.3
4,143,714 - -0.0
4,143,714 - -0.3
4,144,334 - +0.7
4,144,334 - +1.3
4,144,334 - +3.2
4,144,334 - +1.8
4,144,334 - +2.3

Or see this region's nucleotide sequence