Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18180

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,936,474	+		RR42_RS18175	0.17	+0.4
3,936,474	+		RR42_RS18175	0.17	-0.3
3,936,540	+		RR42_RS18175	0.22	-0.5
3,936,540	+		RR42_RS18175	0.22	+0.0
3,936,541	-		RR42_RS18175	0.22	-0.1
3,936,708	+		RR42_RS18175	0.36	+0.3
3,936,709	-		RR42_RS18175	0.36	+0.2
3,936,774	+		RR42_RS18175	0.42	-0.2
3,936,784	-		RR42_RS18175	0.43	-0.0
3,936,875	-		RR42_RS18175	0.50	-0.9
3,936,891	+		RR42_RS18175	0.52	-0.3
3,936,891	+		RR42_RS18175	0.52	-0.2
3,936,891	+		RR42_RS18175	0.52	+0.5
3,936,892	-		RR42_RS18175	0.52	+0.3
3,936,892	-		RR42_RS18175	0.52	-0.3
3,936,892	-		RR42_RS18175	0.52	+0.9
3,936,892	-		RR42_RS18175	0.52	-0.2
3,936,961	+		RR42_RS18175	0.57	-0.6
3,936,961	+		RR42_RS18175	0.57	-0.8
3,936,962	-		RR42_RS18175	0.58	+2.2
3,936,962	-		RR42_RS18175	0.58	-0.6
3,936,962	-		RR42_RS18175	0.58	-1.0
3,936,985	-		RR42_RS18175	0.59	+0.8
3,936,985	-		RR42_RS18175	0.59	-0.6
3,936,999	+		RR42_RS18175	0.61	+1.6
3,937,000	-		RR42_RS18175	0.61	-1.1
3,937,020	+		RR42_RS18175	0.62	-0.6
3,937,020	+		RR42_RS18175	0.62	-2.9
3,937,020	+		RR42_RS18175	0.62	-0.0
3,937,020	+		RR42_RS18175	0.62	+2.1
3,937,021	-		RR42_RS18175	0.62	-0.4
3,937,080	+		RR42_RS18175	0.67	+0.7
3,937,081	-		RR42_RS18175	0.68	+0.9
3,937,084	-		RR42_RS18175	0.68	+1.4
3,937,084	-		RR42_RS18175	0.68	-0.2
3,937,176	+		RR42_RS18175	0.75	+0.1
3,937,176	+		RR42_RS18175	0.75	+0.0
3,937,176	+		RR42_RS18175	0.75	+1.0
3,937,176	+		RR42_RS18175	0.75	+0.4
3,937,177	-		RR42_RS18175	0.76	-3.1
3,937,177	-		RR42_RS18175	0.76	-0.5
3,937,177	-		RR42_RS18175	0.76	+0.9
3,937,177	-		RR42_RS18175	0.76	-0.0
3,937,177	-		RR42_RS18175	0.76	-0.2
3,937,177	-		RR42_RS18175	0.76	+0.5
3,937,192	+		RR42_RS18175	0.77	+1.4
3,937,193	-		RR42_RS18175	0.77	-0.0
3,937,198	-		RR42_RS18175	0.77	+0.1
3,937,207	-		RR42_RS18175	0.78	-0.2
3,937,380	+				-1.5
3,937,380	+				+0.2
3,937,380	+				-2.3
3,937,381	-				+0.3
3,937,381	-				-1.3
3,937,381	-				-1.2
3,937,383	+				-1.7
3,937,383	+				+0.0
3,937,384	-				-2.3
3,937,384	-				+1.1
3,937,524	-				-1.8
3,937,946	+		RR42_RS18180	0.22	-0.4
3,938,222	+		RR42_RS18180	0.36	-0.7
3,938,222	+		RR42_RS18180	0.36	+1.0
3,938,222	+		RR42_RS18180	0.36	-1.2
3,938,223	-		RR42_RS18180	0.36	-0.5
3,938,223	-		RR42_RS18180	0.36	+0.9
3,938,223	-		RR42_RS18180	0.36	-0.9
3,938,223	-		RR42_RS18180	0.36	+2.3
3,938,223	-		RR42_RS18180	0.36	+0.4
3,938,226	+		RR42_RS18180	0.36	-3.4
3,938,226	+		RR42_RS18180	0.36	-0.2
3,938,226	+		RR42_RS18180	0.36	-1.3
3,938,226	+		RR42_RS18180	0.36	-1.2
3,938,227	-		RR42_RS18180	0.36	-0.1
3,938,234	+		RR42_RS18180	0.36	-1.3
3,938,295	-		RR42_RS18180	0.39	+0.1
3,938,409	-		RR42_RS18180	0.44	-0.2
3,938,678	+		RR42_RS18180	0.57	-1.6
3,938,678	+		RR42_RS18180	0.57	-2.1
3,938,678	+		RR42_RS18180	0.57	-0.9
3,938,678	+		RR42_RS18180	0.57	+0.2
3,938,679	-		RR42_RS18180	0.57	-2.5
3,938,679	-		RR42_RS18180	0.57	-0.1
3,939,125	+		RR42_RS18180	0.79	-0.4
3,939,125	+		RR42_RS18180	0.79	+0.5
3,939,125	+		RR42_RS18180	0.79	+1.4
3,939,125	+		RR42_RS18180	0.79	-1.6
3,939,125	+		RR42_RS18180	0.79	-0.2
3,939,125	+		RR42_RS18180	0.79	-0.7
3,939,125	+		RR42_RS18180	0.79	-0.9
3,939,126	-		RR42_RS18180	0.79	+0.8
3,939,126	-		RR42_RS18180	0.79	+0.1
3,939,126	-		RR42_RS18180	0.79	-0.7
3,939,129	+		RR42_RS18180	0.79	-0.9
3,939,129	+		RR42_RS18180	0.79	+1.7
3,939,129	+		RR42_RS18180	0.79	-0.4
3,939,129	+		RR42_RS18180	0.79	-2.2
3,939,129	+		RR42_RS18180	0.79	-0.7
3,939,130	-		RR42_RS18180	0.79	-0.8
3,939,132	-		RR42_RS18180	0.79	-0.1
3,939,132	-		RR42_RS18180	0.79	-3.8
3,939,132	-		RR42_RS18180	0.79	+0.7
3,939,132	-		RR42_RS18180	0.79	+0.1
3,939,251	+		RR42_RS18180	0.84	-0.9
3,939,251	+		RR42_RS18180	0.84	+1.2
3,939,252	-		RR42_RS18180	0.85	-0.9
3,939,252	-		RR42_RS18180	0.85	-1.2
3,939,252	-		RR42_RS18180	0.85	-0.5
3,939,252	-		RR42_RS18180	0.85	-0.5
3,939,257	+		RR42_RS18180	0.85	+1.5
3,939,258	-		RR42_RS18180	0.85	+0.4
3,939,407	+				-0.9
3,939,408	-				-1.5
3,939,408	-				-0.2
3,939,408	-				-0.4
3,939,529	-				-0.8
3,939,701	-				-0.2
3,939,723	+				+0.2
3,939,723	+				-1.4
3,939,724	-				-0.2
3,939,724	-				+0.8
3,939,724	-				-0.1
3,939,724	-				+0.9
3,939,765	+				-1.2
3,939,779	-				+2.6
3,939,779	-				-0.9
3,939,786	+				-0.5
3,939,787	-				+1.7
3,939,787	-				+2.2
3,939,787	-				+0.3
3,939,787	-				-0.2
3,939,792	-				-1.0
3,940,003	+				-3.4
3,940,004	-				-1.2
3,940,051	-		RR42_RS18185	0.14	-0.9
3,940,082	+		RR42_RS18185	0.16	-0.8
3,940,082	+		RR42_RS18185	0.16	-2.3
3,940,083	-		RR42_RS18185	0.16	+0.6
3,940,083	-		RR42_RS18185	0.16	-1.9
3,940,092	-		RR42_RS18185	0.17	+0.1
3,940,115	+		RR42_RS18185	0.19	+0.7
3,940,115	+		RR42_RS18185	0.19	+0.2
3,940,115	+		RR42_RS18185	0.19	+0.0
3,940,180	+		RR42_RS18185	0.25	-0.3
3,940,337	+		RR42_RS18185	0.38	+0.1
3,940,430	+		RR42_RS18185	0.46	-0.3
3,940,446	-		RR42_RS18185	0.48	+1.3
3,940,537	+		RR42_RS18185	0.55	-2.3
3,940,537	+		RR42_RS18185	0.55	+0.7
3,940,538	-		RR42_RS18185	0.55	-1.9
3,940,540	+		RR42_RS18185	0.56	-0.6
3,940,540	+		RR42_RS18185	0.56	+0.7
3,940,541	-		RR42_RS18185	0.56	-1.7
3,940,541	-		RR42_RS18185	0.56	-0.2
3,940,541	-		RR42_RS18185	0.56	+0.6