Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13200

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,842,721	-				-2.2
2,842,721	-				-0.8
2,842,721	-				-0.1
2,842,721	-				-0.1
2,842,729	+				+0.0
2,842,729	+				+0.9
2,842,729	+				+2.4
2,842,729	+				+0.6
2,842,730	-				+1.9
2,842,730	-				-0.4
2,842,743	+				+3.1
2,842,743	+				+0.1
2,842,744	-				+0.1
2,842,744	-				-0.8
2,842,828	+		RR42_RS13195	0.10	+1.1
2,842,828	+		RR42_RS13195	0.10	-0.1
2,842,828	+		RR42_RS13195	0.10	+0.9
2,842,828	+		RR42_RS13195	0.10	+0.9
2,842,828	+		RR42_RS13195	0.10	-2.9
2,842,829	-		RR42_RS13195	0.10	+0.4
2,842,959	+		RR42_RS13195	0.25	+0.7
2,843,010	-		RR42_RS13195	0.30	-0.2
2,843,010	-		RR42_RS13195	0.30	-2.1
2,843,010	-		RR42_RS13195	0.30	-1.0
2,843,010	-		RR42_RS13195	0.30	-0.3
2,843,276	+		RR42_RS13195	0.60	+0.1
2,843,277	-		RR42_RS13195	0.60	-1.3
2,843,277	-		RR42_RS13195	0.60	-0.2
2,843,277	-		RR42_RS13195	0.60	+0.4
2,843,277	-		RR42_RS13195	0.60	+1.4
2,843,645	+				+0.2
2,843,648	+				+0.1
2,843,664	+				+0.9
2,843,664	+				-0.7
2,843,664	+				-2.8
2,843,664	+				-0.2
2,843,812	-		RR42_RS13200	0.20	+0.4
2,843,812	-		RR42_RS13200	0.20	-1.9
2,843,923	+		RR42_RS13200	0.35	-0.4
2,843,965	+		RR42_RS13200	0.40	+0.1
2,843,968	-		RR42_RS13200	0.41	+1.9
2,844,099	+		RR42_RS13200	0.58	-1.5
2,844,100	-		RR42_RS13200	0.58	+2.4
2,844,100	-		RR42_RS13200	0.58	+0.4
2,844,104	+		RR42_RS13200	0.59	-2.4
2,844,104	+		RR42_RS13200	0.59	-1.7
2,844,104	+		RR42_RS13200	0.59	+0.1
2,844,104	+		RR42_RS13200	0.59	-0.1
2,844,104	+		RR42_RS13200	0.59	+0.2
2,844,104	+		RR42_RS13200	0.59	-1.7
2,844,104	+		RR42_RS13200	0.59	+0.0
2,844,104	+		RR42_RS13200	0.59	+0.3
2,844,105	-		RR42_RS13200	0.59	-0.3
2,844,105	-		RR42_RS13200	0.59	-0.1
2,844,188	-		RR42_RS13200	0.70	+2.4
2,844,188	-		RR42_RS13200	0.70	-0.3
2,844,255	+		RR42_RS13200	0.79	-0.2
2,844,255	+		RR42_RS13200	0.79	-2.4
2,844,255	+		RR42_RS13200	0.79	-0.7
2,844,255	+		RR42_RS13200	0.79	+0.7
2,844,255	+		RR42_RS13200	0.79	-0.1
2,844,255	+		RR42_RS13200	0.79	-1.1
2,844,255	+		RR42_RS13200	0.79	+0.8
2,844,255	+		RR42_RS13200	0.79	+1.0
2,844,256	-		RR42_RS13200	0.79	+0.2
2,844,256	-		RR42_RS13200	0.79	-0.5
2,844,256	-		RR42_RS13200	0.79	+0.5
2,844,256	-		RR42_RS13200	0.79	+1.8
2,844,256	-		RR42_RS13200	0.79	+0.6
2,844,256	-		RR42_RS13200	0.79	+0.3
2,844,256	-		RR42_RS13200	0.79	+1.4
2,844,384	+				+0.7
2,844,409	+				-1.4
2,844,409	+				+2.1
2,844,409	+				-2.2
2,844,410	-				+0.2
2,844,410	-				+1.5
2,844,410	-				+3.3
2,844,410	-				-1.6
2,844,428	-				-0.5
2,844,487	-				+0.2
2,844,633	+				+3.4
2,844,634	-				+0.2
2,844,634	-				-1.1
2,844,634	-				-0.1
2,844,634	-				-0.4
2,844,634	-				-1.3
2,844,634	-				+0.6
2,844,659	+				-1.9
2,844,799	+		RR42_RS13205	0.15	-1.0
2,844,910	+		RR42_RS13205	0.27	-0.3
2,844,911	-		RR42_RS13205	0.27	-1.5
2,844,911	-		RR42_RS13205	0.27	-1.1
2,845,018	+		RR42_RS13205	0.38	-2.4
2,845,018	+		RR42_RS13205	0.38	+1.6
2,845,018	+		RR42_RS13205	0.38	-0.4
2,845,019	-		RR42_RS13205	0.38	+0.9
2,845,219	+		RR42_RS13205	0.58	+2.3
2,845,220	-		RR42_RS13205	0.59	+2.1
2,845,220	-		RR42_RS13205	0.59	+0.7
2,845,220	-		RR42_RS13205	0.59	-0.3
2,845,220	-		RR42_RS13205	0.59	+0.1
2,845,220	-		RR42_RS13205	0.59	+0.4
2,845,285	+		RR42_RS13205	0.65	-2.4
2,845,285	+		RR42_RS13205	0.65	-0.8
2,845,285	+		RR42_RS13205	0.65	+1.7
2,845,285	+		RR42_RS13205	0.65	+0.1
2,845,285	+		RR42_RS13205	0.65	-1.2
2,845,285	+		RR42_RS13205	0.65	-0.7
2,845,285	+		RR42_RS13205	0.65	+1.0
2,845,285	+		RR42_RS13205	0.65	+1.8
2,845,285	+		RR42_RS13205	0.65	+1.4
2,845,286	-		RR42_RS13205	0.65	-0.2
2,845,306	+		RR42_RS13205	0.67	-0.6
2,845,306	+		RR42_RS13205	0.67	-0.9
2,845,306	+		RR42_RS13205	0.67	-0.4
2,845,306	+		RR42_RS13205	0.67	-3.2
2,845,307	-		RR42_RS13205	0.67	-0.4
2,845,348	+		RR42_RS13205	0.72	-1.9