Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11575

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11570 and RR42_RS11575 are separated by 332 nucleotidesRR42_RS11575 and RR42_RS11580 are separated by 92 nucleotides RR42_RS11570: RR42_RS11570 - magnesium transporter MgtC, at 2,478,313 to 2,478,633 _RS11570 RR42_RS11575: RR42_RS11575 - hypothetical protein, at 2,478,966 to 2,479,154 _RS11575 RR42_RS11580: RR42_RS11580 - hypothetical protein, at 2,479,247 to 2,480,086 _RS11580 Position (kb) 2478 2479 2480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2478.000 kb on - strandat 2478.000 kb on - strandat 2478.012 kb on + strandat 2478.013 kb on - strandat 2478.250 kb on + strandat 2478.625 kb on + strandat 2478.694 kb on + strandat 2478.883 kb on + strandat 2478.883 kb on + strandat 2478.883 kb on + strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.886 kb on - strandat 2478.912 kb on + strandat 2479.177 kb on + strandat 2479.338 kb on + strand, within RR42_RS11580at 2479.894 kb on - strand, within RR42_RS11580at 2479.918 kb on - strand, within RR42_RS11580at 2480.061 kb on - strandat 2480.061 kb on - strandat 2480.061 kb on - strandat 2480.086 kb on + strandat 2480.087 kb on - strandat 2480.092 kb on + strandat 2480.092 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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2,478,000 - -0.6
2,478,000 - -0.1
2,478,012 + +1.0
2,478,013 - +1.8
2,478,250 + +0.5
2,478,625 + -2.2
2,478,694 + +0.3
2,478,883 + +1.2
2,478,883 + -1.0
2,478,883 + -1.1
2,478,884 - -0.1
2,478,884 - +2.0
2,478,884 - -1.3
2,478,884 - +0.5
2,478,886 - -0.2
2,478,912 + -1.2
2,479,177 + -0.4
2,479,338 + RR42_RS11580 0.11 -1.1
2,479,894 - RR42_RS11580 0.77 -1.8
2,479,918 - RR42_RS11580 0.80 -2.0
2,480,061 - +0.1
2,480,061 - -1.0
2,480,061 - +1.1
2,480,086 + -1.4
2,480,087 - +0.8
2,480,092 + -3.3
2,480,092 + -0.0

Or see this region's nucleotide sequence