Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09990

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,132,941	+				-0.7
2,132,954	-				+3.2
2,132,990	+				+1.1
2,133,040	+				-0.5
2,133,041	-				+1.3
2,133,041	-				-0.3
2,133,127	-				+0.4
2,133,127	-				+0.1
2,133,135	-				+0.8
2,133,286	+				+0.7
2,133,287	-				+0.2
2,133,289	+				+0.2
2,133,290	-				+0.1
2,133,290	-				-0.6
2,133,339	+				-2.3
2,133,340	-				+0.6
2,133,340	-				-0.3
2,133,419	-				-0.8
2,133,486	+				-3.1
2,133,486	+				-1.4
2,133,521	+		RR42_RS09985	0.15	+0.7
2,133,522	-		RR42_RS09985	0.16	+1.9
2,133,522	-		RR42_RS09985	0.16	-1.0
2,133,550	+		RR42_RS09985	0.22	+0.0
2,133,550	+		RR42_RS09985	0.22	-0.0
2,133,554	-		RR42_RS09985	0.23	-0.3
2,133,688	+		RR42_RS09985	0.56	-0.0
2,133,689	-		RR42_RS09985	0.56	-0.2
2,133,776	-		RR42_RS09985	0.77	+0.1
2,133,776	-		RR42_RS09985	0.77	-1.4
2,133,795	-		RR42_RS09985	0.82	+0.1
2,133,814	+		RR42_RS09985	0.86	-1.7
2,133,860	+				-0.4
2,133,860	+				+1.1
2,133,860	+				+0.2
2,133,861	-				-1.2
2,133,861	-				-2.1
2,133,861	-				-1.3
2,133,862	+				+0.4
2,133,863	-				-1.1
2,133,863	-				+0.0
2,133,863	-				+0.4
2,133,863	-				+0.1
2,133,895	+				-1.1
2,133,933	-				+0.3
2,133,933	-				+0.8
2,133,933	-				-0.6
2,133,933	-				-0.7
2,134,138	-		RR42_RS09990	0.17	+2.1
2,134,267	-		RR42_RS09990	0.26	+0.3
2,134,267	-		RR42_RS09990	0.26	+0.7
2,134,312	+		RR42_RS09990	0.29	+2.3
2,134,383	-		RR42_RS09990	0.35	+0.7
2,134,383	-		RR42_RS09990	0.35	+0.5
2,134,451	+		RR42_RS09990	0.40	+0.6
2,134,452	-		RR42_RS09990	0.40	+0.4
2,134,456	+				+3.2
2,134,456	+		RR42_RS09990	0.40	+0.6
2,134,457	-		RR42_RS09990	0.40	+1.1
2,134,457	-		RR42_RS09990	0.40	-0.5
2,134,573	-		RR42_RS09990	0.49	-0.2
2,134,618	+		RR42_RS09990	0.52	-0.6
2,134,679	-		RR42_RS09990	0.56	-0.8
2,134,706	+		RR42_RS09990	0.58	+0.1
2,134,707	-		RR42_RS09990	0.58	+0.3
2,134,707	-		RR42_RS09990	0.58	-1.1
2,134,707	-		RR42_RS09990	0.58	+0.3
2,134,726	+		RR42_RS09990	0.60	+1.8
2,134,727	-		RR42_RS09990	0.60	-0.8
2,134,754	+		RR42_RS09990	0.62	+1.1
2,134,754	+		RR42_RS09990	0.62	+0.4
2,134,755	-		RR42_RS09990	0.62	+0.6
2,134,757	-		RR42_RS09990	0.62	-0.4
2,134,859	-		RR42_RS09990	0.70	-0.1
2,134,864	-		RR42_RS09990	0.70	-0.8
2,135,024	+		RR42_RS09990	0.82	+0.4
2,135,068	-		RR42_RS09990	0.85	-0.3
2,135,097	+		RR42_RS09990	0.87	+0.1
2,135,113	+		RR42_RS09990	0.88	-0.2
2,135,218	-				-0.1
2,135,299	+				+0.3
2,135,331	+				+0.3
2,135,331	+				-0.5
2,135,332	-				+2.3
2,135,332	-				+1.0
2,135,336	-				+0.3
2,135,336	-				+1.6
2,135,358	+				-2.1
2,135,359	-				-0.1
2,135,494	-				+0.1
2,135,669	+				+0.4
2,135,786	-				-0.8
2,135,786	-				-0.9
2,135,802	+				-1.4
2,135,802	+				-0.3
2,135,803	-				+0.6
2,136,021	-		RR42_RS09995	0.24	+0.4
2,136,240	+		RR42_RS09995	0.48	+0.1
2,136,243	+		RR42_RS09995	0.48	+0.4
2,136,243	+		RR42_RS09995	0.48	-1.1