Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09345

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,976,602	+				+0.2
1,976,603	-				-2.4
1,976,603	-				-2.0
1,976,777	+		RR42_RS09340	0.30	+1.0
1,976,783	+		RR42_RS09340	0.31	+0.8
1,976,783	+		RR42_RS09340	0.31	+0.4
1,976,784	-		RR42_RS09340	0.31	+0.5
1,976,804	+		RR42_RS09340	0.34	-2.6
1,976,827	+		RR42_RS09340	0.38	-0.3
1,976,828	-		RR42_RS09340	0.38	-1.5
1,976,828	-		RR42_RS09340	0.38	-1.2
1,976,828	-		RR42_RS09340	0.38	+0.6
1,976,859	-		RR42_RS09340	0.43	-0.3
1,976,865	-		RR42_RS09340	0.44	-0.6
1,976,963	-		RR42_RS09340	0.60	-2.3
1,976,963	-		RR42_RS09340	0.60	+1.4
1,976,963	-		RR42_RS09340	0.60	-0.5
1,976,972	-		RR42_RS09340	0.61	+1.5
1,977,008	-		RR42_RS09340	0.67	+0.8
1,977,059	-		RR42_RS09340	0.75	-1.4
1,977,239	-				+2.5
1,977,242	+				-1.8
1,977,242	+				-0.1
1,977,242	+				+0.1
1,977,242	+				-0.7
1,977,293	+				+1.1
1,977,294	-				-3.5
1,977,329	+				+0.3
1,977,344	+				+0.5
1,977,345	-				+1.2
1,977,387	-				-1.3
1,977,418	+		RR42_RS09345	0.13	+1.7
1,977,418	+		RR42_RS09345	0.13	-0.3
1,977,419	-		RR42_RS09345	0.13	-0.4
1,977,419	-		RR42_RS09345	0.13	+1.2
1,977,419	-		RR42_RS09345	0.13	+0.4
1,977,419	-		RR42_RS09345	0.13	-2.8
1,977,419	-		RR42_RS09345	0.13	-0.4
1,977,520	+		RR42_RS09345	0.36	-2.4
1,977,679	+		RR42_RS09345	0.72	+0.8
1,977,680	-		RR42_RS09345	0.72	+1.5
1,977,680	-		RR42_RS09345	0.72	+0.2
1,977,680	-		RR42_RS09345	0.72	+0.7
1,977,684	+		RR42_RS09345	0.73	+0.3
1,977,684	+		RR42_RS09345	0.73	+1.6
1,977,685	-		RR42_RS09345	0.73	-1.5
1,977,685	-		RR42_RS09345	0.73	-0.4
1,977,798	-				+0.5
1,977,798	-				-1.1
1,977,977	-				-0.2
1,977,983	-				+0.9
1,977,992	+				-0.6
1,978,011	+				-3.4
1,978,011	+				+0.4
1,978,012	-				-2.4
1,978,040	+				+0.3
1,978,040	+				+0.6
1,978,040	+				-1.4
1,978,041	-				+0.4
1,978,041	-				-0.3
1,978,046	-				-1.4
1,978,046	-				+0.2
1,978,049	-				+0.3
1,978,095	+				-0.3
1,978,138	+				+1.7
1,978,196	-		RR42_RS09350	0.15	+0.4
1,978,227	+		RR42_RS09350	0.21	+0.5
1,978,252	-		RR42_RS09350	0.25	+0.4
1,978,306	-		RR42_RS09350	0.35	-1.4
1,978,473	+		RR42_RS09350	0.64	-2.4
1,978,473	+		RR42_RS09350	0.64	-0.0
1,978,474	-		RR42_RS09350	0.64	-3.0
1,978,482	+		RR42_RS09350	0.65	-1.8
1,978,482	+		RR42_RS09350	0.65	-1.1
1,978,483	-		RR42_RS09350	0.65	-1.7
1,978,540	+		RR42_RS09350	0.75	+0.9
1,978,637	-				-2.5
1,978,789	+				-0.8