Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04550

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,014,893	+				+0.0
1,014,894	-				+2.1
1,014,926	+				-0.2
1,014,926	+				+0.2
1,014,926	+				-0.1
1,014,926	+				+0.2
1,014,927	-				-0.4
1,014,927	-				-0.8
1,014,927	-				+0.2
1,014,947	+				+0.5
1,014,948	-				-1.1
1,014,948	-				+0.3
1,014,948	-				+2.2
1,014,948	-				-0.1
1,015,121	+		RR42_RS04545	0.20	+0.6
1,015,122	-		RR42_RS04545	0.21	-0.5
1,015,161	-		RR42_RS04545	0.25	-0.1
1,015,161	-		RR42_RS04545	0.25	-0.9
1,015,343	+		RR42_RS04545	0.44	-2.0
1,015,344	-		RR42_RS04545	0.45	+0.2
1,015,502	+		RR42_RS04545	0.62	+0.9
1,015,503	-		RR42_RS04545	0.62	-1.9
1,015,537	+		RR42_RS04545	0.65	-0.2
1,015,537	+		RR42_RS04545	0.65	+0.4
1,015,538	-		RR42_RS04545	0.66	-3.7
1,015,562	+		RR42_RS04545	0.68	-3.6
1,015,563	-		RR42_RS04545	0.68	-2.1
1,015,564	+		RR42_RS04545	0.68	+0.7
1,015,564	+		RR42_RS04545	0.68	-1.1
1,015,564	+		RR42_RS04545	0.68	-0.4
1,015,564	+		RR42_RS04545	0.68	-1.8
1,015,564	+		RR42_RS04545	0.68	-0.4
1,015,564	+		RR42_RS04545	0.68	+0.0
1,015,565	-		RR42_RS04545	0.69	+0.7
1,015,646	-		RR42_RS04545	0.77	-1.2
1,015,646	-		RR42_RS04545	0.77	-1.3
1,015,712	+		RR42_RS04545	0.84	+0.7
1,015,713	-		RR42_RS04545	0.85	+0.1
1,015,713	-		RR42_RS04545	0.85	+0.3
1,015,793	+				+0.4
1,015,794	-				+0.2
1,015,794	-				-0.2
1,015,794	-				+1.8
1,015,795	+				-0.7
1,015,795	+				-1.3
1,015,817	-				-0.9
1,015,854	-				-0.7
1,016,122	+		RR42_RS04550	0.32	-0.5
1,016,122	+		RR42_RS04550	0.32	-1.5
1,016,122	+		RR42_RS04550	0.32	+1.2
1,016,122	+		RR42_RS04550	0.32	+0.3
1,016,123	-		RR42_RS04550	0.32	-0.5
1,016,123	-		RR42_RS04550	0.32	+1.4
1,016,123	-		RR42_RS04550	0.32	-1.5
1,016,123	-		RR42_RS04550	0.32	-0.2
1,016,125	+		RR42_RS04550	0.32	+0.5
1,016,126	-		RR42_RS04550	0.32	-0.7
1,016,564	-		RR42_RS04550	0.87	+1.0
1,016,564	-		RR42_RS04550	0.87	+0.4
1,016,668	+				+0.4
1,016,669	-				+0.8
1,016,698	+				-0.0
1,016,698	+				-0.9
1,016,698	+				+0.4
1,016,699	+				-1.5
1,016,699	-				+0.4
1,016,700	+				+0.4
1,016,700	+				-0.5
1,016,701	-				+1.9
1,016,701	-				+1.6
1,016,701	-				+0.8
1,016,760	+				+1.0
1,016,761	-				+0.0
1,016,805	+				-1.5
1,016,806	-				+0.0
1,016,806	-				-0.2
1,017,138	+		RR42_RS04555	0.29	+1.2
1,017,646	-		RR42_RS04555	0.78	+0.8
1,017,646	-		RR42_RS04555	0.78	+0.0
1,017,646	-		RR42_RS04555	0.78	-0.4