Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04510

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04505 and RR42_RS04510 are separated by 60 nucleotides RR42_RS04505: RR42_RS04505 - N-acetylglucosaminyl transferase, at 1,005,759 to 1,006,997 _RS04505 RR42_RS04510: RR42_RS04510 - UDP-glucose 6-dehydrogenase, at 1,007,058 to 1,008,431 _RS04510 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -2 -1 0 1 2at 1007.021 kb on + strandat 1007.050 kb on + strandat 1007.057 kb on + strandat 1007.149 kb on + strandat 1007.349 kb on + strand, within RR42_RS04510at 1007.349 kb on + strand, within RR42_RS04510at 1007.349 kb on + strand, within RR42_RS04510at 1007.349 kb on + strand, within RR42_RS04510at 1007.349 kb on + strand, within RR42_RS04510at 1007.349 kb on + strand, within RR42_RS04510at 1007.382 kb on + strand, within RR42_RS04510at 1007.663 kb on + strand, within RR42_RS04510at 1007.663 kb on + strand, within RR42_RS04510at 1007.670 kb on + strand, within RR42_RS04510at 1007.670 kb on + strand, within RR42_RS04510at 1007.703 kb on + strand, within RR42_RS04510at 1007.703 kb on + strand, within RR42_RS04510at 1007.829 kb on + strand, within RR42_RS04510at 1007.831 kb on + strand, within RR42_RS04510at 1007.831 kb on + strand, within RR42_RS04510at 1007.831 kb on + strand, within RR42_RS04510at 1007.841 kb on + strand, within RR42_RS04510at 1008.023 kb on + strand, within RR42_RS04510at 1008.272 kb on + strand, within RR42_RS04510at 1008.360 kb on + strandat 1008.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,007,021 + +0.9
1,007,050 + -1.3
1,007,057 + +0.4
1,007,149 + +0.6
1,007,349 + RR42_RS04510 0.21 +1.7
1,007,349 + RR42_RS04510 0.21 +1.0
1,007,349 + RR42_RS04510 0.21 +0.9
1,007,349 + RR42_RS04510 0.21 -0.5
1,007,349 + RR42_RS04510 0.21 +1.8
1,007,349 + RR42_RS04510 0.21 -1.5
1,007,382 + RR42_RS04510 0.24 -1.3
1,007,663 + RR42_RS04510 0.44 +0.5
1,007,663 + RR42_RS04510 0.44 +1.5
1,007,670 + RR42_RS04510 0.45 -0.8
1,007,670 + RR42_RS04510 0.45 -1.5
1,007,703 + RR42_RS04510 0.47 -0.9
1,007,703 + RR42_RS04510 0.47 -0.5
1,007,829 + RR42_RS04510 0.56 +1.0
1,007,831 + RR42_RS04510 0.56 +1.3
1,007,831 + RR42_RS04510 0.56 +0.4
1,007,831 + RR42_RS04510 0.56 -1.8
1,007,841 + RR42_RS04510 0.57 +1.2
1,008,023 + RR42_RS04510 0.70 +0.6
1,008,272 + RR42_RS04510 0.88 +0.0
1,008,360 + +0.3
1,008,396 + -2.2

Or see this region's nucleotide sequence