Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04420

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04415 and RR42_RS04420 are separated by 2 nucleotidesRR42_RS04420 and RR42_RS04425 are separated by 8 nucleotides RR42_RS04415: RR42_RS04415 - ABC transporter, at 985,232 to 987,520 _RS04415 RR42_RS04420: RR42_RS04420 - required for efflux of an amino acid polymer (from data), at 987,523 to 988,005 _RS04420 RR42_RS04425: RR42_RS04425 - hypothetical protein, at 988,014 to 988,877 _RS04425 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.595 kb on - strand, within RR42_RS04415at 986.596 kb on + strand, within RR42_RS04415at 986.686 kb on + strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 987.437 kb on + strandat 987.440 kb on + strandat 987.440 kb on + strandat 987.450 kb on - strandat 987.518 kb on + strandat 987.519 kb on - strandat 987.718 kb on - strand, within RR42_RS04420at 987.811 kb on + strand, within RR42_RS04420at 987.812 kb on - strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.907 kb on - strand, within RR42_RS04420at 987.907 kb on - strand, within RR42_RS04420at 987.940 kb on + strand, within RR42_RS04420at 988.072 kb on + strandat 988.072 kb on + strandat 988.072 kb on + strandat 988.072 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.117 kb on + strand, within RR42_RS04425at 988.117 kb on + strand, within RR42_RS04425at 988.117 kb on + strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.120 kb on + strand, within RR42_RS04425at 988.190 kb on - strand, within RR42_RS04425at 988.254 kb on + strand, within RR42_RS04425at 988.254 kb on + strand, within RR42_RS04425at 988.291 kb on - strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.381 kb on + strand, within RR42_RS04425at 988.382 kb on - strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.430 kb on - strand, within RR42_RS04425at 988.465 kb on + strand, within RR42_RS04425at 988.465 kb on + strand, within RR42_RS04425at 988.535 kb on + strand, within RR42_RS04425at 988.536 kb on - strand, within RR42_RS04425at 988.536 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.568 kb on - strand, within RR42_RS04425at 988.593 kb on + strand, within RR42_RS04425at 988.618 kb on + strand, within RR42_RS04425at 988.627 kb on + strand, within RR42_RS04425at 988.627 kb on + strand, within RR42_RS04425at 988.627 kb on + strand, within RR42_RS04425at 988.628 kb on - strand, within RR42_RS04425at 988.628 kb on - strand, within RR42_RS04425at 988.628 kb on - strand, within RR42_RS04425at 988.628 kb on - strand, within RR42_RS04425at 988.630 kb on + strand, within RR42_RS04425at 988.630 kb on + strand, within RR42_RS04425at 988.630 kb on + strand, within RR42_RS04425at 988.647 kb on + strand, within RR42_RS04425at 988.688 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.881 kb on + strandat 988.881 kb on + strandat 988.882 kb on - strandat 988.951 kb on + strandat 988.963 kb on - strandat 988.963 kb on - strandat 988.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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986,594 + RR42_RS04415 0.60 -1.8
986,594 + RR42_RS04415 0.60 +0.0
986,594 + RR42_RS04415 0.60 -1.5
986,594 + RR42_RS04415 0.60 -2.3
986,594 + RR42_RS04415 0.60 -1.7
986,594 + RR42_RS04415 0.60 +0.9
986,595 - RR42_RS04415 0.60 -1.3
986,596 + RR42_RS04415 0.60 -1.8
986,686 + RR42_RS04415 0.64 -2.5
986,904 - RR42_RS04415 0.73 +1.0
986,904 - RR42_RS04415 0.73 -2.4
986,904 - RR42_RS04415 0.73 -2.1
986,904 - RR42_RS04415 0.73 +3.6
986,904 - RR42_RS04415 0.73 -0.8
986,904 - RR42_RS04415 0.73 -1.5
986,904 - RR42_RS04415 0.73 -1.3
987,437 + -1.4
987,440 + -0.1
987,440 + -1.2
987,450 - -2.1
987,518 + +0.1
987,519 - -2.5
987,718 - RR42_RS04420 0.40 -1.8
987,811 + RR42_RS04420 0.60 -0.1
987,812 - RR42_RS04420 0.60 -0.5
987,906 + RR42_RS04420 0.79 +0.9
987,906 + RR42_RS04420 0.79 -0.3
987,906 + RR42_RS04420 0.79 -2.5
987,907 - RR42_RS04420 0.80 -3.0
987,907 - RR42_RS04420 0.80 -0.5
987,940 + RR42_RS04420 0.86 -0.5
988,072 + -1.3
988,072 + +0.3
988,072 + +0.3
988,072 + +0.9
988,097 + -0.1
988,097 + +1.5
988,097 + -0.7
988,097 + -0.4
988,097 + +2.0
988,097 + -0.5
988,098 - +0.3
988,098 - -2.5
988,098 - -0.9
988,098 - +1.0
988,117 + RR42_RS04425 0.12 +0.1
988,117 + RR42_RS04425 0.12 -1.3
988,117 + RR42_RS04425 0.12 +0.4
988,118 - RR42_RS04425 0.12 +1.0
988,118 - RR42_RS04425 0.12 -0.3
988,118 - RR42_RS04425 0.12 -2.1
988,118 - RR42_RS04425 0.12 -0.0
988,118 - RR42_RS04425 0.12 +1.0
988,118 - RR42_RS04425 0.12 -1.0
988,120 + RR42_RS04425 0.12 -1.3
988,190 - RR42_RS04425 0.20 +0.9
988,254 + RR42_RS04425 0.28 -1.3
988,254 + RR42_RS04425 0.28 -0.2
988,291 - RR42_RS04425 0.32 +1.6
988,339 + RR42_RS04425 0.38 -1.8
988,339 + RR42_RS04425 0.38 -0.4
988,339 + RR42_RS04425 0.38 +0.1
988,342 + RR42_RS04425 0.38 -0.8
988,342 + RR42_RS04425 0.38 +0.3
988,342 + RR42_RS04425 0.38 -0.9
988,342 + RR42_RS04425 0.38 -0.0
988,342 + RR42_RS04425 0.38 +0.7
988,343 - RR42_RS04425 0.38 +0.2
988,343 - RR42_RS04425 0.38 +2.4
988,343 - RR42_RS04425 0.38 +0.2
988,343 - RR42_RS04425 0.38 -2.8
988,343 - RR42_RS04425 0.38 +0.3
988,381 + RR42_RS04425 0.42 -0.3
988,382 - RR42_RS04425 0.43 +0.8
988,393 + RR42_RS04425 0.44 +1.6
988,393 + RR42_RS04425 0.44 -0.5
988,393 + RR42_RS04425 0.44 +0.1
988,393 + RR42_RS04425 0.44 +0.9
988,393 + RR42_RS04425 0.44 -0.2
988,394 - RR42_RS04425 0.44 +0.9
988,394 - RR42_RS04425 0.44 -2.6
988,394 - RR42_RS04425 0.44 +0.3
988,430 - RR42_RS04425 0.48 +0.3
988,465 + RR42_RS04425 0.52 -1.0
988,465 + RR42_RS04425 0.52 +2.4
988,535 + RR42_RS04425 0.60 +1.1
988,536 - RR42_RS04425 0.60 +0.3
988,536 - RR42_RS04425 0.60 +0.9
988,568 - RR42_RS04425 0.64 +0.1
988,568 - RR42_RS04425 0.64 -0.8
988,568 - RR42_RS04425 0.64 +0.5
988,568 - RR42_RS04425 0.64 +0.1
988,568 - RR42_RS04425 0.64 +0.6
988,568 - RR42_RS04425 0.64 +1.1
988,568 - RR42_RS04425 0.64 -1.5
988,593 + RR42_RS04425 0.67 -0.2
988,618 + RR42_RS04425 0.70 -0.1
988,627 + RR42_RS04425 0.71 +0.1
988,627 + RR42_RS04425 0.71 +0.9
988,627 + RR42_RS04425 0.71 -0.1
988,628 - RR42_RS04425 0.71 -0.5
988,628 - RR42_RS04425 0.71 -1.9
988,628 - RR42_RS04425 0.71 -2.6
988,628 - RR42_RS04425 0.71 +0.3
988,630 + RR42_RS04425 0.71 +0.7
988,630 + RR42_RS04425 0.71 -1.5
988,630 + RR42_RS04425 0.71 -1.2
988,647 + RR42_RS04425 0.73 +0.2
988,688 + RR42_RS04425 0.78 -2.6
988,690 + RR42_RS04425 0.78 +2.0
988,690 + RR42_RS04425 0.78 -0.0
988,690 + RR42_RS04425 0.78 -0.0
988,690 + RR42_RS04425 0.78 -0.7
988,690 + RR42_RS04425 0.78 -0.5
988,691 - RR42_RS04425 0.78 -0.8
988,691 - RR42_RS04425 0.78 +0.4
988,691 - RR42_RS04425 0.78 -2.9
988,691 - RR42_RS04425 0.78 -1.2
988,691 - RR42_RS04425 0.78 -0.8
988,691 - RR42_RS04425 0.78 +0.5
988,691 - RR42_RS04425 0.78 +0.6
988,691 - RR42_RS04425 0.78 -1.1
988,881 + -1.5
988,881 + +0.4
988,882 - -1.6
988,951 + -0.1
988,963 - -2.1
988,963 - +0.3
988,963 - -0.4

Or see this region's nucleotide sequence