Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03980 and RR42_RS03985 are separated by 28 nucleotides RR42_RS03985 and RR42_RS03990 are separated by 274 nucleotides
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 878.338 kb on + strand, within RR42_RS03980 at 878.339 kb on - strand, within RR42_RS03980 at 878.430 kb on - strand, within RR42_RS03980 at 879.706 kb on - strand, within RR42_RS03985 at 880.428 kb on - strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.653 kb on - strand, within RR42_RS03985 at 880.685 kb on + strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.755 kb on - strand, within RR42_RS03985 at 880.856 kb on + strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.946 kb on + strand, within RR42_RS03985 at 880.947 kb on - strand, within RR42_RS03985 at 880.952 kb on + strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 881.039 kb on + strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.272 kb on - strand at 881.272 kb on - strand at 881.296 kb on + strand at 881.296 kb on + strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.298 kb on + strand at 881.325 kb on + strand at 881.326 kb on - strand at 881.388 kb on - strand at 881.389 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 882.046 kb on - strand, within RR42_RS03990 at 882.090 kb on + strand, within RR42_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 878,338 + RR42_RS03980 0.31 +2.3 878,339 - RR42_RS03980 0.31 +1.2 878,430 - RR42_RS03980 0.38 +1.1 879,706 - RR42_RS03985 0.22 +0.8 880,428 - RR42_RS03985 0.60 +1.7 880,649 + RR42_RS03985 0.71 +0.4 880,649 + RR42_RS03985 0.71 +0.7 880,650 - RR42_RS03985 0.71 +0.8 880,650 - RR42_RS03985 0.71 -1.0 880,650 - RR42_RS03985 0.71 +1.5 880,653 - RR42_RS03985 0.72 +1.5 880,685 + RR42_RS03985 0.73 -0.2 880,686 - RR42_RS03985 0.73 +0.7 880,686 - RR42_RS03985 0.73 -0.4 880,754 + RR42_RS03985 0.77 +0.1 880,754 + RR42_RS03985 0.77 +1.0 880,754 + RR42_RS03985 0.77 +0.6 880,754 + RR42_RS03985 0.77 +0.7 880,754 + RR42_RS03985 0.77 +2.0 880,755 - RR42_RS03985 0.77 +1.0 880,856 + RR42_RS03985 0.82 +1.2 880,857 - RR42_RS03985 0.82 -1.0 880,857 - RR42_RS03985 0.82 -1.3 880,946 + RR42_RS03985 0.87 +1.2 880,947 - RR42_RS03985 0.87 +0.9 880,952 + RR42_RS03985 0.87 -2.3 880,986 - RR42_RS03985 0.89 -1.5 880,986 - RR42_RS03985 0.89 +1.2 881,039 + -2.0 881,040 - +0.7 881,040 - -1.5 881,040 - +1.2 881,272 - -0.8 881,272 - +0.6 881,296 + +1.5 881,296 + +0.4 881,297 - -1.1 881,297 - -1.0 881,297 - +0.5 881,298 + -0.1 881,325 + -1.0 881,326 - -0.4 881,388 - -0.6 881,389 - -0.5 881,473 - -0.1 881,473 - -0.3 881,473 - +0.2 881,847 + RR42_RS03990 0.29 +1.0 881,847 + RR42_RS03990 0.29 +0.7 881,847 + RR42_RS03990 0.29 +1.0 881,848 - RR42_RS03990 0.29 -0.1 881,848 - RR42_RS03990 0.29 +0.7 881,848 - RR42_RS03990 0.29 +0.2 881,848 - RR42_RS03990 0.29 +0.6 881,848 - RR42_RS03990 0.29 +0.9 882,046 - RR42_RS03990 0.44 +0.3 882,090 + RR42_RS03990 0.47 -3.7
Or see this region's nucleotide sequence