Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03945 and RR42_RS03950 are separated by 17 nucleotides RR42_RS03950 and RR42_RS03955 are separated by 208 nucleotides RR42_RS03955 and RR42_RS03960 are separated by 49 nucleotides
RR42_RS03945: RR42_RS03945 - chloride channel protein, at 870,223 to 871,962
_RS03945
RR42_RS03950: RR42_RS03950 - AsnC family transcriptional regulator, at 871,980 to 872,402
_RS03950
RR42_RS03955: RR42_RS03955 - amidinotransferase, at 872,611 to 873,510
_RS03955
RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636
_RS03960
Position (kb) 872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.982 kb on - strand at 871.991 kb on - strand at 871.991 kb on - strand at 872.653 kb on + strand at 872.653 kb on + strand at 872.654 kb on - strand at 872.654 kb on - strand at 873.139 kb on + strand, within RR42_RS03955 at 873.139 kb on + strand, within RR42_RS03955 at 873.139 kb on + strand, within RR42_RS03955 at 873.140 kb on - strand, within RR42_RS03955 at 873.140 kb on - strand, within RR42_RS03955 at 873.187 kb on + strand, within RR42_RS03955 at 873.188 kb on - strand, within RR42_RS03955 at 873.188 kb on - strand, within RR42_RS03955 at 873.190 kb on + strand, within RR42_RS03955 at 873.396 kb on - strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.404 kb on - strand, within RR42_RS03955 at 873.404 kb on - strand, within RR42_RS03955 at 873.771 kb on - strand, within RR42_RS03960 at 873.771 kb on - strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.783 kb on - strand, within RR42_RS03960 at 874.053 kb on - strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.238 kb on - strand, within RR42_RS03960
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 871,982 - +0.9 871,991 - +0.2 871,991 - -0.1 872,653 + -0.1 872,653 + -0.2 872,654 - -0.0 872,654 - -0.3 873,139 + RR42_RS03955 0.59 +0.1 873,139 + RR42_RS03955 0.59 +0.4 873,139 + RR42_RS03955 0.59 +0.6 873,140 - RR42_RS03955 0.59 +0.8 873,140 - RR42_RS03955 0.59 +1.1 873,187 + RR42_RS03955 0.64 +0.5 873,188 - RR42_RS03955 0.64 -1.1 873,188 - RR42_RS03955 0.64 -0.1 873,190 + RR42_RS03955 0.64 -0.1 873,396 - RR42_RS03955 0.87 -3.3 873,403 + RR42_RS03955 0.88 -1.2 873,403 + RR42_RS03955 0.88 -0.4 873,403 + RR42_RS03955 0.88 +0.1 873,403 + RR42_RS03955 0.88 -0.8 873,404 - RR42_RS03955 0.88 -1.8 873,404 - RR42_RS03955 0.88 -2.3 873,771 - RR42_RS03960 0.20 -1.2 873,771 - RR42_RS03960 0.20 -0.8 873,782 + RR42_RS03960 0.21 +0.3 873,782 + RR42_RS03960 0.21 +0.1 873,782 + RR42_RS03960 0.21 -1.0 873,782 + RR42_RS03960 0.21 +0.9 873,783 - RR42_RS03960 0.21 +0.5 874,053 - RR42_RS03960 0.46 -0.1 874,237 + RR42_RS03960 0.63 +0.7 874,237 + RR42_RS03960 0.63 +2.0 874,238 - RR42_RS03960 0.63 -1.4
Or see this region's nucleotide sequence