Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03950

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03945 and RR42_RS03950 are separated by 17 nucleotidesRR42_RS03950 and RR42_RS03955 are separated by 208 nucleotides RR42_RS03945: RR42_RS03945 - chloride channel protein, at 870,223 to 871,962 _RS03945 RR42_RS03950: RR42_RS03950 - AsnC family transcriptional regulator, at 871,980 to 872,402 _RS03950 RR42_RS03955: RR42_RS03955 - amidinotransferase, at 872,611 to 873,510 _RS03955 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1at 871.500 kb on + strand, within RR42_RS03945at 871.501 kb on - strand, within RR42_RS03945at 871.501 kb on - strand, within RR42_RS03945at 871.501 kb on - strand, within RR42_RS03945at 871.501 kb on - strand, within RR42_RS03945at 871.501 kb on - strand, within RR42_RS03945at 871.504 kb on + strand, within RR42_RS03945at 871.596 kb on - strand, within RR42_RS03945at 871.982 kb on - strandat 871.991 kb on - strandat 871.991 kb on - strandat 872.653 kb on + strandat 872.653 kb on + strandat 872.654 kb on - strandat 872.654 kb on - strandat 873.139 kb on + strand, within RR42_RS03955at 873.139 kb on + strand, within RR42_RS03955at 873.139 kb on + strand, within RR42_RS03955at 873.140 kb on - strand, within RR42_RS03955at 873.140 kb on - strand, within RR42_RS03955at 873.187 kb on + strand, within RR42_RS03955at 873.188 kb on - strand, within RR42_RS03955at 873.188 kb on - strand, within RR42_RS03955at 873.190 kb on + strand, within RR42_RS03955at 873.396 kb on - strand, within RR42_RS03955

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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871,500 + RR42_RS03945 0.73 -0.4
871,501 - RR42_RS03945 0.73 +0.9
871,501 - RR42_RS03945 0.73 +0.4
871,501 - RR42_RS03945 0.73 -1.8
871,501 - RR42_RS03945 0.73 +0.5
871,501 - RR42_RS03945 0.73 +0.7
871,504 + RR42_RS03945 0.74 -3.7
871,596 - RR42_RS03945 0.79 +0.0
871,982 - +0.9
871,991 - +0.2
871,991 - -0.1
872,653 + -0.1
872,653 + -0.2
872,654 - -0.0
872,654 - -0.3
873,139 + RR42_RS03955 0.59 +0.1
873,139 + RR42_RS03955 0.59 +0.4
873,139 + RR42_RS03955 0.59 +0.6
873,140 - RR42_RS03955 0.59 +0.8
873,140 - RR42_RS03955 0.59 +1.1
873,187 + RR42_RS03955 0.64 +0.5
873,188 - RR42_RS03955 0.64 -1.1
873,188 - RR42_RS03955 0.64 -0.1
873,190 + RR42_RS03955 0.64 -0.1
873,396 - RR42_RS03955 0.87 -3.3

Or see this region's nucleotide sequence