Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03885 and RR42_RS03890 overlap by 8 nucleotides RR42_RS03890 and RR42_RS03895 overlap by 4 nucleotides RR42_RS03895 and RR42_RS03900 are separated by 29 nucleotides
RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311
_RS03885
RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038
_RS03890
RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667
_RS03895
RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821
_RS03900
Position (kb) 859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 858.300 kb on + strand at 858.301 kb on - strand at 858.318 kb on + strand at 858.319 kb on - strand at 858.319 kb on - strand at 858.515 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.662 kb on - strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.666 kb on - strand, within RR42_RS03890 at 858.750 kb on - strand, within RR42_RS03890 at 859.300 kb on + strand, within RR42_RS03895 at 859.301 kb on - strand, within RR42_RS03895 at 859.456 kb on + strand, within RR42_RS03895 at 859.516 kb on + strand, within RR42_RS03895 at 859.517 kb on - strand, within RR42_RS03895 at 859.844 kb on - strand, within RR42_RS03900 at 860.022 kb on + strand, within RR42_RS03900 at 860.089 kb on + strand, within RR42_RS03900 at 860.090 kb on - strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.299 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.583 kb on + strand, within RR42_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 858,300 + -2.7 858,301 - -0.9 858,318 + -2.8 858,319 - -0.9 858,319 - +0.4 858,515 + RR42_RS03890 0.29 -0.7 858,661 + RR42_RS03890 0.49 -2.7 858,661 + RR42_RS03890 0.49 -1.1 858,662 - RR42_RS03890 0.49 +1.3 858,665 + RR42_RS03890 0.49 -0.8 858,665 + RR42_RS03890 0.49 -2.1 858,665 + RR42_RS03890 0.49 +0.0 858,666 - RR42_RS03890 0.49 -2.7 858,750 - RR42_RS03890 0.61 -0.6 859,300 + RR42_RS03895 0.42 -0.9 859,301 - RR42_RS03895 0.42 -0.2 859,456 + RR42_RS03895 0.67 -0.9 859,516 + RR42_RS03895 0.76 +0.1 859,517 - RR42_RS03895 0.76 -0.9 859,844 - RR42_RS03900 0.13 -0.1 860,022 + RR42_RS03900 0.29 +0.9 860,089 + RR42_RS03900 0.35 -0.6 860,090 - RR42_RS03900 0.35 +1.4 860,184 + RR42_RS03900 0.43 +0.1 860,184 + RR42_RS03900 0.43 +0.2 860,299 - RR42_RS03900 0.54 -0.4 860,464 - RR42_RS03900 0.68 -0.8 860,464 - RR42_RS03900 0.68 +0.9 860,583 + RR42_RS03900 0.79 -0.3
Or see this region's nucleotide sequence