Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03140 and RR42_RS03145 are separated by 94 nucleotides RR42_RS03145 and RR42_RS03150 are separated by 48 nucleotides RR42_RS03150 and RR42_RS03155 are separated by 77 nucleotides
RR42_RS03140: RR42_RS03140 - molybdenum cofactor biosynthesis protein MoaC, at 694,065 to 694,547
_RS03140
RR42_RS03145: RR42_RS03145 - peptidase M48, at 694,642 to 696,450
_RS03145
RR42_RS03150: RR42_RS03150 - hypothetical protein, at 696,499 to 697,110
_RS03150
RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174
_RS03155
Position (kb) 694
695
696
697 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 693.661 kb on - strand at 693.684 kb on + strand at 693.685 kb on - strand at 693.723 kb on - strand at 693.799 kb on + strand at 693.799 kb on + strand at 693.800 kb on - strand at 693.800 kb on - strand at 693.800 kb on - strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.936 kb on + strand at 693.937 kb on - strand at 693.965 kb on + strand at 694.028 kb on - strand at 694.066 kb on + strand at 694.066 kb on + strand at 694.067 kb on - strand at 694.168 kb on + strand, within RR42_RS03140 at 694.168 kb on + strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.285 kb on + strand, within RR42_RS03140 at 694.324 kb on - strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.505 kb on + strand at 694.505 kb on + strand at 694.505 kb on + strand at 694.506 kb on - strand at 694.667 kb on - strand at 694.667 kb on - strand at 694.667 kb on - strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.672 kb on - strand at 694.672 kb on - strand at 694.672 kb on - strand at 694.855 kb on - strand, within RR42_RS03145 at 694.855 kb on - strand, within RR42_RS03145 at 694.912 kb on + strand, within RR42_RS03145 at 694.912 kb on + strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 695.104 kb on + strand, within RR42_RS03145 at 695.104 kb on + strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.131 kb on + strand, within RR42_RS03145 at 695.132 kb on - strand, within RR42_RS03145 at 695.279 kb on - strand, within RR42_RS03145 at 695.280 kb on + strand, within RR42_RS03145 at 695.281 kb on - strand, within RR42_RS03145 at 695.377 kb on - strand, within RR42_RS03145 at 695.377 kb on - strand, within RR42_RS03145 at 695.668 kb on + strand, within RR42_RS03145 at 695.669 kb on - strand, within RR42_RS03145 at 695.765 kb on - strand, within RR42_RS03145 at 695.968 kb on + strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 696.121 kb on + strand, within RR42_RS03145 at 696.122 kb on - strand, within RR42_RS03145 at 696.122 kb on - strand, within RR42_RS03145 at 696.236 kb on - strand, within RR42_RS03145 at 696.236 kb on - strand, within RR42_RS03145 at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.287 kb on - strand at 696.287 kb on - strand at 696.305 kb on - strand at 696.361 kb on + strand at 696.362 kb on - strand at 696.445 kb on - strand at 696.445 kb on - strand at 696.445 kb on - strand at 696.614 kb on - strand, within RR42_RS03150 at 696.663 kb on + strand, within RR42_RS03150 at 696.664 kb on - strand, within RR42_RS03150 at 696.664 kb on - strand, within RR42_RS03150 at 696.864 kb on - strand, within RR42_RS03150 at 696.864 kb on - strand, within RR42_RS03150 at 696.905 kb on + strand, within RR42_RS03150 at 697.004 kb on + strand, within RR42_RS03150 at 697.005 kb on - strand, within RR42_RS03150 at 697.055 kb on + strand at 697.066 kb on + strand at 697.168 kb on - strand at 697.168 kb on - strand at 697.239 kb on - strand at 697.277 kb on + strand at 697.277 kb on + strand at 697.278 kb on - strand at 697.370 kb on - strand, within RR42_RS03155
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 693,661 - +1.8 693,684 + -0.9 693,685 - +1.6 693,723 - +0.7 693,799 + +0.6 693,799 + -3.3 693,800 - +0.3 693,800 - -0.9 693,800 - +0.1 693,933 + -0.4 693,933 + +0.8 693,933 + +0.4 693,933 + -0.7 693,933 + +0.1 693,933 + +0.1 693,933 + -0.5 693,934 - -2.7 693,934 - +1.1 693,934 - +0.5 693,934 - +0.6 693,934 - +0.8 693,936 + -0.9 693,937 - +0.2 693,965 + -0.1 694,028 - -0.2 694,066 + +0.2 694,066 + -1.4 694,067 - -3.0 694,168 + RR42_RS03140 0.21 -1.2 694,168 + RR42_RS03140 0.21 -2.5 694,169 - RR42_RS03140 0.22 -2.3 694,169 - RR42_RS03140 0.22 -2.6 694,169 - RR42_RS03140 0.22 -0.3 694,285 + RR42_RS03140 0.46 +0.1 694,324 - RR42_RS03140 0.54 -2.9 694,383 + RR42_RS03140 0.66 +0.4 694,383 + RR42_RS03140 0.66 -2.4 694,383 + RR42_RS03140 0.66 -4.9 694,505 + -1.9 694,505 + -2.9 694,505 + -3.4 694,506 - -3.4 694,667 - +1.4 694,667 - +0.8 694,667 - -1.4 694,671 + +1.6 694,671 + +0.5 694,671 + -0.2 694,671 + -1.7 694,672 - -0.7 694,672 - +0.2 694,672 - +0.1 694,855 - RR42_RS03145 0.12 -1.7 694,855 - RR42_RS03145 0.12 +1.1 694,912 + RR42_RS03145 0.15 -1.7 694,912 + RR42_RS03145 0.15 +1.3 694,913 - RR42_RS03145 0.15 +0.9 694,913 - RR42_RS03145 0.15 +2.6 694,913 - RR42_RS03145 0.15 -2.3 695,104 + RR42_RS03145 0.26 -1.7 695,104 + RR42_RS03145 0.26 +0.7 695,105 - RR42_RS03145 0.26 +1.3 695,105 - RR42_RS03145 0.26 -2.0 695,105 - RR42_RS03145 0.26 -1.0 695,105 - RR42_RS03145 0.26 -0.2 695,131 + RR42_RS03145 0.27 -1.3 695,132 - RR42_RS03145 0.27 -1.4 695,279 - RR42_RS03145 0.35 -0.2 695,280 + RR42_RS03145 0.35 +1.1 695,281 - RR42_RS03145 0.35 -0.9 695,377 - RR42_RS03145 0.41 -2.2 695,377 - RR42_RS03145 0.41 -0.5 695,668 + RR42_RS03145 0.57 -0.9 695,669 - RR42_RS03145 0.57 -1.7 695,765 - RR42_RS03145 0.62 +0.9 695,968 + RR42_RS03145 0.73 +0.3 695,969 - RR42_RS03145 0.73 -1.3 695,969 - RR42_RS03145 0.73 -2.6 695,969 - RR42_RS03145 0.73 +0.3 696,121 + RR42_RS03145 0.82 -1.3 696,122 - RR42_RS03145 0.82 +0.1 696,122 - RR42_RS03145 0.82 +0.1 696,236 - RR42_RS03145 0.88 +0.8 696,236 - RR42_RS03145 0.88 -0.8 696,286 + +0.5 696,286 + -2.2 696,286 + -1.9 696,286 + +0.5 696,286 + +1.0 696,287 - -0.3 696,287 - -0.2 696,305 - -0.4 696,361 + -1.7 696,362 - -0.9 696,445 - +0.7 696,445 - -1.2 696,445 - -1.7 696,614 - RR42_RS03150 0.19 +0.3 696,663 + RR42_RS03150 0.27 +0.3 696,664 - RR42_RS03150 0.27 -0.0 696,664 - RR42_RS03150 0.27 +0.7 696,864 - RR42_RS03150 0.60 -1.4 696,864 - RR42_RS03150 0.60 -1.2 696,905 + RR42_RS03150 0.66 +0.4 697,004 + RR42_RS03150 0.83 +0.1 697,005 - RR42_RS03150 0.83 +0.1 697,055 + -2.7 697,066 + -0.2 697,168 - -0.4 697,168 - +1.0 697,239 - +0.4 697,277 + -0.1 697,277 + -2.9 697,278 - -1.0 697,370 - RR42_RS03155 0.18 -0.3
Or see this region's nucleotide sequence