Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides RR42_RS02875 and RR42_RS02880 are separated by 30 nucleotides
RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826
_RS02870
RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921
_RS02875
RR42_RS02880: RR42_RS02880 - universal stress protein UspA, at 642,952 to 643,389
_RS02880
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 641.107 kb on + strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.824 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.859 kb on - strand at 641.932 kb on + strand at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.079 kb on + strand, within RR42_RS02875 at 642.271 kb on - strand, within RR42_RS02875 at 642.331 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.604 kb on - strand, within RR42_RS02875 at 642.697 kb on + strand, within RR42_RS02875 at 642.698 kb on - strand, within RR42_RS02875 at 642.953 kb on + strand at 642.954 kb on - strand at 642.982 kb on + strand at 643.100 kb on + strand, within RR42_RS02880 at 643.101 kb on - strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.405 kb on + strand at 643.405 kb on + strand at 643.406 kb on - strand at 643.466 kb on + strand at 643.466 kb on + strand at 643.467 kb on - strand at 643.633 kb on + strand at 643.634 kb on - strand at 643.634 kb on - strand at 643.644 kb on + strand at 643.653 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.689 kb on - strand at 643.689 kb on - strand at 643.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 641,107 + RR42_RS02870 0.57 +2.9 641,107 + RR42_RS02870 0.57 +2.3 641,108 - RR42_RS02870 0.57 -0.3 641,108 - RR42_RS02870 0.57 -0.7 641,108 - RR42_RS02870 0.57 +1.9 641,134 + RR42_RS02870 0.59 +1.3 641,134 + RR42_RS02870 0.59 -0.4 641,135 - RR42_RS02870 0.59 +1.3 641,135 - RR42_RS02870 0.59 +0.7 641,824 + -0.1 641,858 + -1.4 641,858 + -0.9 641,858 + +1.6 641,859 - -0.6 641,932 + +0.1 642,015 + RR42_RS02875 0.15 +1.1 642,015 + RR42_RS02875 0.15 +0.4 642,015 + RR42_RS02875 0.15 -0.0 642,015 + RR42_RS02875 0.15 -0.2 642,015 + RR42_RS02875 0.15 +0.6 642,015 + RR42_RS02875 0.15 -0.6 642,015 + RR42_RS02875 0.15 -0.7 642,016 - RR42_RS02875 0.15 -0.3 642,016 - RR42_RS02875 0.15 +0.4 642,016 - RR42_RS02875 0.15 +0.5 642,019 + RR42_RS02875 0.15 -0.5 642,019 + RR42_RS02875 0.15 -0.5 642,019 + RR42_RS02875 0.15 -1.9 642,019 + RR42_RS02875 0.15 -1.6 642,019 + RR42_RS02875 0.15 -0.9 642,019 + RR42_RS02875 0.15 -1.4 642,020 - RR42_RS02875 0.15 -0.9 642,020 - RR42_RS02875 0.15 -0.6 642,079 + RR42_RS02875 0.21 -1.9 642,271 - RR42_RS02875 0.39 -0.9 642,331 + RR42_RS02875 0.44 -1.2 642,405 + RR42_RS02875 0.51 -0.7 642,405 + RR42_RS02875 0.51 +1.3 642,406 - RR42_RS02875 0.51 -0.3 642,406 - RR42_RS02875 0.51 -0.7 642,406 - RR42_RS02875 0.51 -1.4 642,406 - RR42_RS02875 0.51 +0.4 642,406 - RR42_RS02875 0.51 -1.5 642,604 - RR42_RS02875 0.70 -0.9 642,697 + RR42_RS02875 0.79 +0.4 642,698 - RR42_RS02875 0.79 -0.0 642,953 + +0.2 642,954 - -0.6 642,982 + -0.2 643,100 + RR42_RS02880 0.34 +0.1 643,101 - RR42_RS02880 0.34 +1.1 643,252 + RR42_RS02880 0.68 +0.3 643,252 + RR42_RS02880 0.68 +0.1 643,252 + RR42_RS02880 0.68 -1.9 643,253 - RR42_RS02880 0.69 +1.6 643,253 - RR42_RS02880 0.69 -0.4 643,253 - RR42_RS02880 0.69 +0.6 643,405 + +0.4 643,405 + -0.7 643,406 - +0.7 643,466 + +0.6 643,466 + +0.2 643,467 - -1.7 643,633 + -1.9 643,634 - +0.7 643,634 - -0.3 643,644 + -0.8 643,653 + -1.2 643,688 + -0.2 643,688 + +0.4 643,688 + +0.0 643,688 + -0.4 643,689 - +0.2 643,689 - -1.0 643,871 - -1.9
Or see this region's nucleotide sequence