Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02830 and RR42_RS02835 are separated by 480 nucleotides RR42_RS02835 and RR42_RS02840 overlap by 4 nucleotides
RR42_RS02830: RR42_RS02830 - glycyl-tRNA synthetase subunit alpha, at 629,777 to 630,727
_RS02830
RR42_RS02835: RR42_RS02835 - acyltransferase, at 631,208 to 632,815
_RS02835
RR42_RS02840: RR42_RS02840 - cation transporter, at 632,812 to 633,684
_RS02840
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 630.739 kb on - strand at 630.742 kb on - strand at 630.742 kb on - strand at 630.879 kb on + strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.963 kb on + strand at 630.963 kb on + strand at 630.999 kb on + strand at 631.007 kb on - strand at 631.010 kb on - strand at 631.096 kb on + strand at 631.097 kb on - strand at 631.204 kb on - strand at 632.816 kb on - strand at 633.183 kb on - strand, within RR42_RS02840 at 633.241 kb on - strand, within RR42_RS02840 at 633.315 kb on - strand, within RR42_RS02840 at 633.315 kb on - strand, within RR42_RS02840 at 633.318 kb on - strand, within RR42_RS02840 at 633.375 kb on - strand, within RR42_RS02840 at 633.500 kb on - strand, within RR42_RS02840 at 633.726 kb on + strand at 633.726 kb on + strand at 633.726 kb on + strand at 633.727 kb on - strand at 633.727 kb on - strand at 633.727 kb on - strand at 633.727 kb on - strand at 633.727 kb on - strand at 633.799 kb on + strand at 633.799 kb on + strand at 633.800 kb on - strand at 633.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 630,739 - -0.9 630,742 - -3.5 630,742 - +0.6 630,879 + -0.1 630,880 - +0.2 630,880 - +0.4 630,880 - -0.6 630,880 - +1.3 630,880 - +1.6 630,880 - -0.5 630,880 - +1.0 630,880 - -0.4 630,963 + -2.0 630,963 + -0.5 630,999 + -1.2 631,007 - +0.5 631,010 - -0.4 631,096 + -1.1 631,097 - -0.4 631,204 - -2.4 632,816 - +0.1 633,183 - RR42_RS02840 0.42 -0.6 633,241 - RR42_RS02840 0.49 -0.7 633,315 - RR42_RS02840 0.58 -0.4 633,315 - RR42_RS02840 0.58 -0.9 633,318 - RR42_RS02840 0.58 +0.4 633,375 - RR42_RS02840 0.64 +0.4 633,500 - RR42_RS02840 0.79 +0.1 633,726 + +0.1 633,726 + -1.2 633,726 + -0.9 633,727 - +1.0 633,727 - +0.2 633,727 - -2.3 633,727 - -0.0 633,727 - -0.7 633,799 + -0.4 633,799 + +0.4 633,800 - +0.3 633,800 - +2.2
Or see this region's nucleotide sequence