Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02825

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02820 and RR42_RS02825 are separated by 36 nucleotidesRR42_RS02825 and RR42_RS02830 overlap by 4 nucleotides RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087 _RS02820 RR42_RS02825: RR42_RS02825 - hypothetical protein, at 629,124 to 629,780 _RS02825 RR42_RS02830: RR42_RS02830 - glycyl-tRNA synthetase subunit alpha, at 629,777 to 630,727 _RS02830 Position (kb) 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1at 629.144 kb on + strandat 629.144 kb on + strandat 629.145 kb on - strandat 629.145 kb on - strandat 629.145 kb on - strandat 629.390 kb on - strand, within RR42_RS02825at 629.390 kb on - strand, within RR42_RS02825at 629.390 kb on - strand, within RR42_RS02825at 629.393 kb on - strand, within RR42_RS02825at 629.393 kb on - strand, within RR42_RS02825at 629.666 kb on - strand, within RR42_RS02825at 630.739 kb on - strandat 630.742 kb on - strandat 630.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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629,144 + -1.9
629,144 + +0.6
629,145 - -0.2
629,145 - -0.3
629,145 - -2.6
629,390 - RR42_RS02825 0.40 -0.4
629,390 - RR42_RS02825 0.40 -1.0
629,390 - RR42_RS02825 0.40 +0.3
629,393 - RR42_RS02825 0.41 +0.3
629,393 - RR42_RS02825 0.41 -3.0
629,666 - RR42_RS02825 0.82 +0.6
630,739 - -0.9
630,742 - -3.5
630,742 - +0.6

Or see this region's nucleotide sequence