Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02735 and RR42_RS02740 overlap by 20 nucleotides RR42_RS02740 and RR42_RS02745 overlap by 4 nucleotides RR42_RS02745 and RR42_RS02750 are separated by 81 nucleotides RR42_RS02750 and RR42_RS02755 are separated by 17 nucleotides
RR42_RS02735: RR42_RS02735 - hypothetical protein, at 609,230 to 610,477
_RS02735
RR42_RS02740: RR42_RS02740 - hypothetical protein, at 610,458 to 610,967
_RS02740
RR42_RS02745: RR42_RS02745 - Xaa-Pro aminopeptidase, at 610,964 to 612,346
_RS02745
RR42_RS02750: RR42_RS02750 - mannose-1-phosphate guanylyltransferase, at 612,428 to 613,168
_RS02750
RR42_RS02755: RR42_RS02755 - branched-chain amino acid transporter, at 613,186 to 613,524
_RS02755
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.868 kb on - strand, within RR42_RS02740 at 610.944 kb on + strand at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.275 kb on - strand, within RR42_RS02745 at 611.318 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.644 kb on - strand, within RR42_RS02745 at 611.704 kb on - strand, within RR42_RS02745 at 612.052 kb on - strand, within RR42_RS02745 at 612.181 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.187 kb on - strand, within RR42_RS02745 at 612.382 kb on + strand at 612.570 kb on + strand, within RR42_RS02750 at 612.571 kb on - strand, within RR42_RS02750 at 612.573 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.631 kb on - strand, within RR42_RS02750 at 612.640 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 613.187 kb on + strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 610,868 - RR42_RS02740 0.80 +0.8 610,944 + +1.8 611,131 - RR42_RS02745 0.12 -2.0 611,131 - RR42_RS02745 0.12 -0.1 611,131 - RR42_RS02745 0.12 -0.4 611,131 - RR42_RS02745 0.12 -0.6 611,131 - RR42_RS02745 0.12 +1.4 611,275 - RR42_RS02745 0.22 -0.8 611,318 - RR42_RS02745 0.26 -0.8 611,401 - RR42_RS02745 0.32 +0.2 611,401 - RR42_RS02745 0.32 -0.1 611,461 - RR42_RS02745 0.36 +0.9 611,461 - RR42_RS02745 0.36 -1.0 611,461 - RR42_RS02745 0.36 +1.7 611,461 - RR42_RS02745 0.36 -1.4 611,644 - RR42_RS02745 0.49 +0.7 611,644 - RR42_RS02745 0.49 -1.2 611,644 - RR42_RS02745 0.49 -0.1 611,644 - RR42_RS02745 0.49 -0.7 611,704 - RR42_RS02745 0.54 -3.2 612,052 - RR42_RS02745 0.79 -0.7 612,181 - RR42_RS02745 0.88 -0.5 612,187 - RR42_RS02745 0.88 +0.0 612,187 - RR42_RS02745 0.88 +0.1 612,187 - RR42_RS02745 0.88 +0.3 612,187 - RR42_RS02745 0.88 -1.5 612,187 - RR42_RS02745 0.88 -2.3 612,187 - RR42_RS02745 0.88 -0.7 612,382 + +0.6 612,570 + RR42_RS02750 0.19 +0.7 612,571 - RR42_RS02750 0.19 +0.5 612,573 + RR42_RS02750 0.20 +0.8 612,630 + RR42_RS02750 0.27 +1.8 612,630 + RR42_RS02750 0.27 +0.5 612,630 + RR42_RS02750 0.27 +2.5 612,630 + RR42_RS02750 0.27 +1.3 612,631 - RR42_RS02750 0.27 +1.3 612,640 + RR42_RS02750 0.29 +1.6 612,819 + RR42_RS02750 0.53 +1.8 612,819 + RR42_RS02750 0.53 +1.9 612,819 + RR42_RS02750 0.53 +0.6 612,942 + RR42_RS02750 0.69 +0.8 612,942 + RR42_RS02750 0.69 +1.7 613,187 + +0.9 613,188 - +0.1 613,188 - -2.7 613,188 - -1.0 613,211 + +0.8 613,211 + -0.6 613,211 + -0.4 613,211 + -0.7 613,212 - +1.1
Or see this region's nucleotide sequence