Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02680 and RR42_RS02685 are separated by 89 nucleotides RR42_RS02685 and RR42_RS02690 are separated by 26 nucleotides RR42_RS02690 and RR42_RS02695 are separated by 127 nucleotides RR42_RS02695 and RR42_RS02700 are separated by 175 nucleotides
RR42_RS02680: RR42_RS02680 - phospholipid-binding protein, at 598,748 to 599,407
_RS02680
RR42_RS02685: RR42_RS02685 - phosphoglycerate mutase, at 599,497 to 600,171
_RS02685
RR42_RS02690: RR42_RS02690 - membrane protein, at 600,198 to 600,923
_RS02690
RR42_RS02695: RR42_RS02695 - lipoprotein, at 601,051 to 601,635
_RS02695
RR42_RS02700: RR42_RS02700 - ATP-dependent DNA helicase RuvB, at 601,811 to 602,866
_RS02700
Position (kb) 600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 599.243 kb on + strand, within RR42_RS02680 at 599.243 kb on + strand, within RR42_RS02680 at 599.244 kb on - strand, within RR42_RS02680 at 599.244 kb on - strand, within RR42_RS02680 at 599.244 kb on - strand, within RR42_RS02680 at 599.286 kb on + strand, within RR42_RS02680 at 599.366 kb on + strand at 599.366 kb on + strand at 599.366 kb on + strand at 599.366 kb on + strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.367 kb on - strand at 599.405 kb on + strand at 599.405 kb on + strand at 599.406 kb on - strand at 599.466 kb on - strand at 599.684 kb on - strand, within RR42_RS02685 at 599.782 kb on + strand, within RR42_RS02685 at 599.807 kb on - strand, within RR42_RS02685 at 599.870 kb on - strand, within RR42_RS02685 at 600.002 kb on - strand, within RR42_RS02685 at 600.199 kb on + strand at 600.200 kb on - strand at 600.200 kb on - strand at 600.241 kb on + strand at 600.241 kb on + strand at 600.241 kb on + strand at 600.242 kb on - strand at 600.245 kb on - strand at 600.286 kb on + strand, within RR42_RS02690 at 600.286 kb on + strand, within RR42_RS02690 at 600.287 kb on - strand, within RR42_RS02690 at 600.287 kb on - strand, within RR42_RS02690 at 600.287 kb on - strand, within RR42_RS02690 at 600.287 kb on - strand, within RR42_RS02690 at 600.331 kb on + strand, within RR42_RS02690 at 600.331 kb on + strand, within RR42_RS02690 at 600.331 kb on + strand, within RR42_RS02690 at 600.331 kb on + strand, within RR42_RS02690 at 600.332 kb on - strand, within RR42_RS02690 at 600.332 kb on - strand, within RR42_RS02690 at 600.332 kb on - strand, within RR42_RS02690 at 600.332 kb on - strand, within RR42_RS02690 at 600.394 kb on + strand, within RR42_RS02690 at 600.394 kb on + strand, within RR42_RS02690 at 600.394 kb on + strand, within RR42_RS02690 at 600.394 kb on + strand, within RR42_RS02690 at 600.394 kb on + strand, within RR42_RS02690 at 600.454 kb on - strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.496 kb on + strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.497 kb on - strand, within RR42_RS02690 at 600.557 kb on + strand, within RR42_RS02690 at 600.557 kb on + strand, within RR42_RS02690 at 600.557 kb on + strand, within RR42_RS02690 at 600.557 kb on + strand, within RR42_RS02690 at 600.589 kb on + strand, within RR42_RS02690 at 600.698 kb on - strand, within RR42_RS02690 at 600.703 kb on + strand, within RR42_RS02690 at 600.703 kb on + strand, within RR42_RS02690 at 600.871 kb on + strand at 600.871 kb on + strand at 600.871 kb on + strand at 600.871 kb on + strand at 600.874 kb on + strand at 600.875 kb on - strand at 600.879 kb on + strand at 600.880 kb on + strand at 600.881 kb on - strand at 600.881 kb on - strand at 600.881 kb on - strand at 600.955 kb on + strand at 600.956 kb on - strand at 600.956 kb on - strand at 600.956 kb on - strand at 600.992 kb on + strand at 601.052 kb on + strand at 601.053 kb on - strand at 601.156 kb on - strand, within RR42_RS02695 at 601.156 kb on - strand, within RR42_RS02695 at 601.239 kb on + strand, within RR42_RS02695 at 601.245 kb on - strand, within RR42_RS02695 at 601.245 kb on - strand, within RR42_RS02695 at 601.328 kb on + strand, within RR42_RS02695 at 601.331 kb on + strand, within RR42_RS02695 at 601.332 kb on - strand, within RR42_RS02695 at 601.544 kb on + strand, within RR42_RS02695 at 601.545 kb on - strand, within RR42_RS02695 at 601.786 kb on + strand at 601.786 kb on + strand at 601.786 kb on + strand at 601.787 kb on - strand at 601.790 kb on + strand at 601.790 kb on + strand at 601.790 kb on + strand at 601.790 kb on + strand at 601.790 kb on + strand at 601.790 kb on + strand at 601.791 kb on - strand at 601.791 kb on - strand at 601.791 kb on - strand at 601.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 599,243 + RR42_RS02680 0.75 +1.0 599,243 + RR42_RS02680 0.75 -0.3 599,244 - RR42_RS02680 0.75 +1.1 599,244 - RR42_RS02680 0.75 +1.8 599,244 - RR42_RS02680 0.75 +1.0 599,286 + RR42_RS02680 0.82 -0.3 599,366 + +0.1 599,366 + +1.1 599,366 + +0.6 599,366 + -1.0 599,367 - -1.2 599,367 - -1.2 599,367 - -1.4 599,367 - +2.6 599,367 - +0.2 599,367 - -0.2 599,367 - +0.4 599,405 + +1.6 599,405 + +0.3 599,406 - +0.1 599,466 - +0.4 599,684 - RR42_RS02685 0.28 -2.0 599,782 + RR42_RS02685 0.42 -2.4 599,807 - RR42_RS02685 0.46 -0.0 599,870 - RR42_RS02685 0.55 -1.3 600,002 - RR42_RS02685 0.75 -0.1 600,199 + -0.3 600,200 - +0.6 600,200 - +0.2 600,241 + +1.5 600,241 + -0.8 600,241 + +1.5 600,242 - -3.1 600,245 - -0.5 600,286 + RR42_RS02690 0.12 +0.1 600,286 + RR42_RS02690 0.12 +1.3 600,287 - RR42_RS02690 0.12 +0.3 600,287 - RR42_RS02690 0.12 +0.7 600,287 - RR42_RS02690 0.12 +1.3 600,287 - RR42_RS02690 0.12 +1.0 600,331 + RR42_RS02690 0.18 +1.4 600,331 + RR42_RS02690 0.18 -0.6 600,331 + RR42_RS02690 0.18 +1.1 600,331 + RR42_RS02690 0.18 +0.8 600,332 - RR42_RS02690 0.18 +0.4 600,332 - RR42_RS02690 0.18 -3.0 600,332 - RR42_RS02690 0.18 -2.2 600,332 - RR42_RS02690 0.18 +2.4 600,394 + RR42_RS02690 0.27 +1.2 600,394 + RR42_RS02690 0.27 -0.9 600,394 + RR42_RS02690 0.27 +0.4 600,394 + RR42_RS02690 0.27 -2.0 600,394 + RR42_RS02690 0.27 -0.9 600,454 - RR42_RS02690 0.35 +0.9 600,496 + RR42_RS02690 0.41 -0.5 600,496 + RR42_RS02690 0.41 +0.0 600,496 + RR42_RS02690 0.41 -0.4 600,496 + RR42_RS02690 0.41 -0.9 600,496 + RR42_RS02690 0.41 +0.5 600,496 + RR42_RS02690 0.41 -0.3 600,496 + RR42_RS02690 0.41 +1.5 600,496 + RR42_RS02690 0.41 +1.1 600,496 + RR42_RS02690 0.41 -0.3 600,496 + RR42_RS02690 0.41 -0.7 600,496 + RR42_RS02690 0.41 -0.4 600,496 + RR42_RS02690 0.41 +1.1 600,496 + RR42_RS02690 0.41 -2.2 600,496 + RR42_RS02690 0.41 -2.3 600,496 + RR42_RS02690 0.41 -0.1 600,496 + RR42_RS02690 0.41 -0.4 600,496 + RR42_RS02690 0.41 +0.9 600,497 - RR42_RS02690 0.41 +0.7 600,497 - RR42_RS02690 0.41 -0.9 600,497 - RR42_RS02690 0.41 +0.5 600,497 - RR42_RS02690 0.41 +0.3 600,497 - RR42_RS02690 0.41 +0.6 600,497 - RR42_RS02690 0.41 -1.0 600,497 - RR42_RS02690 0.41 +0.5 600,497 - RR42_RS02690 0.41 +1.9 600,497 - RR42_RS02690 0.41 -0.0 600,557 + RR42_RS02690 0.49 +0.5 600,557 + RR42_RS02690 0.49 +0.1 600,557 + RR42_RS02690 0.49 +1.4 600,557 + RR42_RS02690 0.49 -2.5 600,589 + RR42_RS02690 0.54 +1.7 600,698 - RR42_RS02690 0.69 +0.3 600,703 + RR42_RS02690 0.70 -0.2 600,703 + RR42_RS02690 0.70 +1.0 600,871 + -1.4 600,871 + -1.3 600,871 + +0.2 600,871 + +0.3 600,874 + +0.2 600,875 - +0.5 600,879 + -2.0 600,880 + -0.0 600,881 - -1.7 600,881 - -1.8 600,881 - -0.9 600,955 + -0.0 600,956 - +0.4 600,956 - +1.3 600,956 - -1.0 600,992 + +0.0 601,052 + +0.1 601,053 - +0.3 601,156 - RR42_RS02695 0.18 -2.7 601,156 - RR42_RS02695 0.18 -0.5 601,239 + RR42_RS02695 0.32 +0.2 601,245 - RR42_RS02695 0.33 -1.1 601,245 - RR42_RS02695 0.33 -0.1 601,328 + RR42_RS02695 0.47 +0.1 601,331 + RR42_RS02695 0.48 +0.3 601,332 - RR42_RS02695 0.48 +0.4 601,544 + RR42_RS02695 0.84 +0.5 601,545 - RR42_RS02695 0.84 +0.9 601,786 + -0.9 601,786 + +2.1 601,786 + -0.3 601,787 - +0.3 601,790 + +0.7 601,790 + +0.0 601,790 + -0.5 601,790 + -2.2 601,790 + +0.3 601,790 + -0.1 601,791 - -0.2 601,791 - +1.0 601,791 - -0.4 601,791 - +0.5
Or see this region's nucleotide sequence