Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02600

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02595 and RR42_RS02600 are separated by 130 nucleotidesRR42_RS02600 and RR42_RS02605 are separated by 17 nucleotides RR42_RS02595: RR42_RS02595 - glutamine amidotransferase, at 582,417 to 583,247 _RS02595 RR42_RS02600: RR42_RS02600 - tartrate dehydrogenase, at 583,378 to 584,466 _RS02600 RR42_RS02605: RR42_RS02605 - hydroxypyruvate reductase, at 584,484 to 585,803 _RS02605 Position (kb) 583 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 582.673 kb on + strand, within RR42_RS02595at 582.673 kb on + strand, within RR42_RS02595at 582.673 kb on + strand, within RR42_RS02595at 582.673 kb on + strand, within RR42_RS02595at 582.673 kb on + strand, within RR42_RS02595at 582.674 kb on - strand, within RR42_RS02595at 582.674 kb on - strand, within RR42_RS02595at 582.674 kb on - strand, within RR42_RS02595at 582.674 kb on - strand, within RR42_RS02595at 582.677 kb on - strand, within RR42_RS02595at 582.727 kb on + strand, within RR42_RS02595at 582.727 kb on + strand, within RR42_RS02595at 582.727 kb on + strand, within RR42_RS02595at 582.728 kb on - strand, within RR42_RS02595at 582.728 kb on - strand, within RR42_RS02595at 582.883 kb on + strand, within RR42_RS02595at 582.883 kb on + strand, within RR42_RS02595at 582.883 kb on + strand, within RR42_RS02595at 582.884 kb on - strand, within RR42_RS02595at 583.016 kb on + strand, within RR42_RS02595at 583.286 kb on + strandat 583.287 kb on - strandat 583.387 kb on + strandat 583.388 kb on - strandat 583.388 kb on - strandat 583.522 kb on + strand, within RR42_RS02600at 583.522 kb on + strand, within RR42_RS02600at 583.525 kb on + strand, within RR42_RS02600at 583.525 kb on + strand, within RR42_RS02600at 583.525 kb on + strand, within RR42_RS02600at 583.526 kb on - strand, within RR42_RS02600at 583.579 kb on + strand, within RR42_RS02600at 583.591 kb on + strand, within RR42_RS02600at 583.591 kb on + strand, within RR42_RS02600at 583.591 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.632 kb on + strand, within RR42_RS02600at 583.633 kb on - strand, within RR42_RS02600at 583.681 kb on + strand, within RR42_RS02600at 583.681 kb on + strand, within RR42_RS02600at 583.681 kb on + strand, within RR42_RS02600at 583.682 kb on - strand, within RR42_RS02600at 583.777 kb on + strand, within RR42_RS02600at 583.778 kb on - strand, within RR42_RS02600at 583.778 kb on - strand, within RR42_RS02600at 583.782 kb on - strand, within RR42_RS02600at 583.990 kb on + strand, within RR42_RS02600at 584.050 kb on + strand, within RR42_RS02600at 584.051 kb on - strand, within RR42_RS02600at 584.193 kb on + strand, within RR42_RS02600at 584.193 kb on + strand, within RR42_RS02600at 584.525 kb on + strandat 584.526 kb on - strandat 584.667 kb on + strand, within RR42_RS02605at 584.668 kb on - strand, within RR42_RS02605at 584.755 kb on + strand, within RR42_RS02605at 584.755 kb on + strand, within RR42_RS02605at 584.969 kb on + strand, within RR42_RS02605at 584.970 kb on - strand, within RR42_RS02605at 584.970 kb on - strand, within RR42_RS02605at 584.975 kb on + strand, within RR42_RS02605at 585.119 kb on + strand, within RR42_RS02605at 585.123 kb on + strand, within RR42_RS02605at 585.123 kb on + strand, within RR42_RS02605at 585.123 kb on + strand, within RR42_RS02605at 585.123 kb on + strand, within RR42_RS02605at 585.124 kb on - strand, within RR42_RS02605at 585.124 kb on - strand, within RR42_RS02605at 585.124 kb on - strand, within RR42_RS02605at 585.186 kb on + strand, within RR42_RS02605at 585.186 kb on + strand, within RR42_RS02605at 585.187 kb on - strand, within RR42_RS02605at 585.388 kb on - strand, within RR42_RS02605at 585.410 kb on - strand, within RR42_RS02605at 585.410 kb on - strand, within RR42_RS02605at 585.417 kb on + strand, within RR42_RS02605at 585.417 kb on + strand, within RR42_RS02605at 585.418 kb on - strand, within RR42_RS02605

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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582,673 + RR42_RS02595 0.31 +0.4
582,673 + RR42_RS02595 0.31 +0.1
582,673 + RR42_RS02595 0.31 -3.1
582,673 + RR42_RS02595 0.31 -1.1
582,673 + RR42_RS02595 0.31 -1.1
582,674 - RR42_RS02595 0.31 -0.1
582,674 - RR42_RS02595 0.31 -0.7
582,674 - RR42_RS02595 0.31 -0.2
582,674 - RR42_RS02595 0.31 -0.6
582,677 - RR42_RS02595 0.31 +1.0
582,727 + RR42_RS02595 0.37 -0.4
582,727 + RR42_RS02595 0.37 -0.8
582,727 + RR42_RS02595 0.37 +1.9
582,728 - RR42_RS02595 0.37 +0.5
582,728 - RR42_RS02595 0.37 +0.3
582,883 + RR42_RS02595 0.56 -0.4
582,883 + RR42_RS02595 0.56 -0.0
582,883 + RR42_RS02595 0.56 +0.9
582,884 - RR42_RS02595 0.56 +0.3
583,016 + RR42_RS02595 0.72 +0.7
583,286 + -0.8
583,287 - -0.8
583,387 + -2.5
583,388 - -1.1
583,388 - -2.1
583,522 + RR42_RS02600 0.13 -0.2
583,522 + RR42_RS02600 0.13 -2.7
583,525 + RR42_RS02600 0.13 +0.5
583,525 + RR42_RS02600 0.13 -0.6
583,525 + RR42_RS02600 0.13 +0.5
583,526 - RR42_RS02600 0.14 -3.3
583,579 + RR42_RS02600 0.18 +1.1
583,591 + RR42_RS02600 0.20 +0.5
583,591 + RR42_RS02600 0.20 -0.5
583,591 + RR42_RS02600 0.20 -1.9
583,632 + RR42_RS02600 0.23 +0.3
583,632 + RR42_RS02600 0.23 +0.7
583,632 + RR42_RS02600 0.23 +0.3
583,632 + RR42_RS02600 0.23 +1.2
583,632 + RR42_RS02600 0.23 +2.9
583,632 + RR42_RS02600 0.23 -1.2
583,633 - RR42_RS02600 0.23 -0.2
583,681 + RR42_RS02600 0.28 -0.6
583,681 + RR42_RS02600 0.28 +0.1
583,681 + RR42_RS02600 0.28 -0.1
583,682 - RR42_RS02600 0.28 -2.1
583,777 + RR42_RS02600 0.37 +0.3
583,778 - RR42_RS02600 0.37 +0.8
583,778 - RR42_RS02600 0.37 +1.7
583,782 - RR42_RS02600 0.37 +1.1
583,990 + RR42_RS02600 0.56 -2.9
584,050 + RR42_RS02600 0.62 -1.1
584,051 - RR42_RS02600 0.62 -2.2
584,193 + RR42_RS02600 0.75 -1.5
584,193 + RR42_RS02600 0.75 -0.2
584,525 + +0.0
584,526 - -0.2
584,667 + RR42_RS02605 0.14 +0.4
584,668 - RR42_RS02605 0.14 +1.8
584,755 + RR42_RS02605 0.21 +0.8
584,755 + RR42_RS02605 0.21 +0.9
584,969 + RR42_RS02605 0.37 -1.2
584,970 - RR42_RS02605 0.37 -0.0
584,970 - RR42_RS02605 0.37 +2.4
584,975 + RR42_RS02605 0.37 +0.1
585,119 + RR42_RS02605 0.48 +0.4
585,123 + RR42_RS02605 0.48 -2.2
585,123 + RR42_RS02605 0.48 -0.5
585,123 + RR42_RS02605 0.48 -0.1
585,123 + RR42_RS02605 0.48 -3.3
585,124 - RR42_RS02605 0.48 +1.8
585,124 - RR42_RS02605 0.48 -1.7
585,124 - RR42_RS02605 0.48 +0.1
585,186 + RR42_RS02605 0.53 -0.1
585,186 + RR42_RS02605 0.53 +1.4
585,187 - RR42_RS02605 0.53 -1.8
585,388 - RR42_RS02605 0.68 -0.0
585,410 - RR42_RS02605 0.70 -0.0
585,410 - RR42_RS02605 0.70 -1.7
585,417 + RR42_RS02605 0.71 -1.5
585,417 + RR42_RS02605 0.71 -1.4
585,418 - RR42_RS02605 0.71 -0.3

Or see this region's nucleotide sequence