Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02575 and RR42_RS02580 are separated by 63 nucleotides RR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides RR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845
_RS02580
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271
_RS02590
Position (kb) 580
581 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 579.153 kb on + strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.343 kb on + strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.844 kb on + strand, within RR42_RS02575 at 579.845 kb on - strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 580.054 kb on + strand at 580.055 kb on - strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.142 kb on + strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.174 kb on + strand at 580.174 kb on + strand at 580.175 kb on - strand at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.332 kb on + strand, within RR42_RS02580 at 580.333 kb on - strand, within RR42_RS02580 at 580.335 kb on + strand, within RR42_RS02580 at 580.570 kb on + strand, within RR42_RS02580 at 580.571 kb on - strand, within RR42_RS02580 at 580.576 kb on + strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.715 kb on - strand, within RR42_RS02580 at 580.729 kb on + strand, within RR42_RS02580 at 580.759 kb on + strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.843 kb on + strand at 580.843 kb on + strand at 580.843 kb on + strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.193 kb on + strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.196 kb on + strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.274 kb on + strand, within RR42_RS02585 at 581.367 kb on - strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.416 kb on - strand, within RR42_RS02585 at 581.475 kb on + strand at 581.476 kb on - strand at 581.476 kb on - strand at 581.483 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.568 kb on - strand at 581.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 579,153 + +5.1 579,154 - +4.5 579,154 - +5.1 579,154 - +4.4 579,271 - RR42_RS02575 0.13 +3.2 579,271 - RR42_RS02575 0.13 +3.9 579,271 - RR42_RS02575 0.13 +4.6 579,307 + RR42_RS02575 0.17 +5.0 579,307 + RR42_RS02575 0.17 +4.9 579,308 - RR42_RS02575 0.17 +4.7 579,308 - RR42_RS02575 0.17 +4.3 579,343 + RR42_RS02575 0.21 +4.6 579,344 - RR42_RS02575 0.21 +4.4 579,344 - RR42_RS02575 0.21 +4.7 579,844 + RR42_RS02575 0.77 +4.1 579,845 - RR42_RS02575 0.77 +3.9 579,940 + RR42_RS02575 0.87 +5.9 579,940 + RR42_RS02575 0.87 +3.4 579,940 + RR42_RS02575 0.87 +4.7 580,054 + +4.2 580,055 - +4.5 580,123 + +4.6 580,123 + +5.0 580,123 + +4.8 580,124 - +4.8 580,124 - +4.2 580,124 - +4.8 580,142 + +4.6 580,143 - +3.5 580,143 - +4.5 580,143 - +4.8 580,174 + +4.7 580,174 + +4.5 580,175 - +3.8 580,316 - RR42_RS02580 0.27 +5.3 580,316 - RR42_RS02580 0.27 +4.8 580,316 - RR42_RS02580 0.27 +4.3 580,332 + RR42_RS02580 0.29 +5.1 580,333 - RR42_RS02580 0.30 +5.2 580,335 + RR42_RS02580 0.30 +4.1 580,570 + RR42_RS02580 0.62 +4.7 580,571 - RR42_RS02580 0.62 +3.5 580,576 + RR42_RS02580 0.63 +4.1 580,577 - RR42_RS02580 0.63 +4.0 580,577 - RR42_RS02580 0.63 +4.5 580,583 + RR42_RS02580 0.64 +4.2 580,583 + RR42_RS02580 0.64 +4.9 580,714 + RR42_RS02580 0.82 +4.3 580,714 + RR42_RS02580 0.82 +4.4 580,715 - RR42_RS02580 0.82 +4.4 580,729 + RR42_RS02580 0.84 +4.6 580,759 + RR42_RS02580 0.88 +5.6 580,760 - RR42_RS02580 0.88 +5.1 580,760 - RR42_RS02580 0.88 +4.4 580,760 - RR42_RS02580 0.88 +4.8 580,843 + +1.8 580,843 + +2.3 580,843 + +2.1 580,844 - +5.1 580,844 - +4.6 580,844 - +4.8 580,863 + +5.0 580,863 + +4.6 580,863 + +4.3 580,863 + +5.0 580,864 - +4.2 580,864 - +5.1 580,864 - +5.1 580,864 - +5.2 580,864 - +4.1 580,865 + +3.9 580,865 + +4.6 580,865 + +3.0 580,865 + +4.8 580,865 + +5.1 580,865 + +4.6 580,866 - +3.8 580,866 - +4.7 580,866 - +5.6 580,866 - +4.6 580,866 - +4.8 580,866 - +4.5 580,866 - +4.6 580,866 - +5.4 581,037 + RR42_RS02585 0.26 +4.0 581,037 + RR42_RS02585 0.26 +4.7 581,037 + RR42_RS02585 0.26 +5.1 581,038 - RR42_RS02585 0.26 +4.3 581,038 - RR42_RS02585 0.26 +4.4 581,193 + RR42_RS02585 0.49 +4.4 581,194 - RR42_RS02585 0.49 +4.1 581,194 - RR42_RS02585 0.49 +5.1 581,196 + RR42_RS02585 0.50 +4.8 581,197 - RR42_RS02585 0.50 +4.1 581,197 - RR42_RS02585 0.50 +4.8 581,274 + RR42_RS02585 0.61 +4.9 581,367 - RR42_RS02585 0.75 +4.4 581,379 + RR42_RS02585 0.76 +4.6 581,379 + RR42_RS02585 0.76 +1.1 581,379 + RR42_RS02585 0.76 +4.6 581,380 - RR42_RS02585 0.76 +4.5 581,380 - RR42_RS02585 0.76 +6.0 581,380 - RR42_RS02585 0.76 +4.1 581,380 - RR42_RS02585 0.76 +4.6 581,416 - RR42_RS02585 0.82 +5.0 581,475 + +4.5 581,476 - +4.4 581,476 - +4.5 581,483 + +3.1 581,536 + +3.6 581,536 + +4.5 581,536 + +3.7 581,568 - +4.6 581,568 - +5.5
Or see this region's nucleotide sequence