Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02380 and RR42_RS02385 are separated by 70 nucleotides RR42_RS02385 and RR42_RS02390 are separated by 170 nucleotides RR42_RS02390 and RR42_RS02395 are separated by 52 nucleotides RR42_RS02395 and RR42_RS02400 are separated by 42 nucleotides
RR42_RS02380: RR42_RS02380 - FAD-linked oxidase, at 533,553 to 537,527
_RS02380
RR42_RS02385: RR42_RS02385 - hydrolase, at 537,598 to 538,032
_RS02385
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
RR42_RS02395: RR42_RS02395 - hypothetical protein, at 540,139 to 540,552
_RS02395
RR42_RS02400: RR42_RS02400 - ubiquinone biosynthesis methyltransferase UbiE, at 540,595 to 541,326
_RS02400
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.396 kb on + strand at 537.859 kb on - strand, within RR42_RS02385 at 537.882 kb on + strand, within RR42_RS02385 at 537.883 kb on - strand, within RR42_RS02385 at 538.130 kb on - strand at 538.130 kb on - strand at 538.311 kb on + strand at 538.311 kb on + strand at 538.312 kb on - strand at 538.386 kb on + strand at 538.387 kb on - strand at 538.387 kb on - strand at 538.388 kb on + strand at 538.388 kb on + strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.426 kb on - strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.502 kb on + strand, within RR42_RS02390 at 538.503 kb on - strand, within RR42_RS02390 at 538.516 kb on + strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.528 kb on - strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.531 kb on - strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.612 kb on - strand, within RR42_RS02390 at 538.618 kb on + strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.815 kb on + strand, within RR42_RS02390 at 538.816 kb on - strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 539.059 kb on - strand, within RR42_RS02390 at 539.059 kb on - strand, within RR42_RS02390 at 539.060 kb on + strand, within RR42_RS02390 at 539.060 kb on + strand, within RR42_RS02390 at 539.139 kb on + strand, within RR42_RS02390 at 539.139 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.291 kb on + strand, within RR42_RS02390 at 539.292 kb on - strand, within RR42_RS02390 at 539.587 kb on + strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.634 kb on + strand, within RR42_RS02390 at 539.901 kb on + strand at 539.902 kb on - strand at 540.084 kb on + strand at 540.253 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.402 kb on + strand, within RR42_RS02395 at 540.412 kb on + strand, within RR42_RS02395 at 540.470 kb on - strand, within RR42_RS02395
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 537,396 + +0.4 537,859 - RR42_RS02385 0.60 -2.8 537,882 + RR42_RS02385 0.65 -0.1 537,883 - RR42_RS02385 0.66 -1.2 538,130 - +0.4 538,130 - -0.6 538,311 + -2.7 538,311 + -0.8 538,312 - -0.5 538,386 + +1.9 538,387 - +0.6 538,387 - -1.0 538,388 + -1.5 538,388 + -2.6 538,389 - +0.6 538,389 - -1.4 538,389 - -0.4 538,426 - RR42_RS02390 0.12 +0.3 538,449 + RR42_RS02390 0.13 +0.0 538,449 + RR42_RS02390 0.13 -0.4 538,450 - RR42_RS02390 0.13 +1.5 538,450 - RR42_RS02390 0.13 +0.1 538,502 + RR42_RS02390 0.16 -0.8 538,503 - RR42_RS02390 0.16 -0.9 538,516 + RR42_RS02390 0.17 -1.2 538,517 - RR42_RS02390 0.17 -0.5 538,517 - RR42_RS02390 0.17 -0.3 538,517 - RR42_RS02390 0.17 -1.0 538,527 + RR42_RS02390 0.17 +0.2 538,527 + RR42_RS02390 0.17 +0.7 538,528 - RR42_RS02390 0.17 +1.4 538,530 + RR42_RS02390 0.17 +0.6 538,530 + RR42_RS02390 0.17 -1.0 538,530 + RR42_RS02390 0.17 +0.9 538,530 + RR42_RS02390 0.17 +0.2 538,531 - RR42_RS02390 0.17 -0.3 538,608 + RR42_RS02390 0.21 +0.1 538,608 + RR42_RS02390 0.21 +0.4 538,608 + RR42_RS02390 0.21 +1.7 538,612 - RR42_RS02390 0.22 +1.0 538,618 + RR42_RS02390 0.22 -1.9 538,619 - RR42_RS02390 0.22 -0.0 538,619 - RR42_RS02390 0.22 +0.1 538,815 + RR42_RS02390 0.32 -0.2 538,816 - RR42_RS02390 0.33 -1.4 538,817 + RR42_RS02390 0.33 +1.6 538,817 + RR42_RS02390 0.33 -0.4 538,817 + RR42_RS02390 0.33 -0.2 538,817 + RR42_RS02390 0.33 +1.0 538,817 + RR42_RS02390 0.33 +1.2 538,818 - RR42_RS02390 0.33 +0.2 538,818 - RR42_RS02390 0.33 +0.8 538,818 - RR42_RS02390 0.33 -1.4 539,059 - RR42_RS02390 0.45 +0.7 539,059 - RR42_RS02390 0.45 -0.0 539,060 + RR42_RS02390 0.45 +1.9 539,060 + RR42_RS02390 0.45 +0.2 539,139 + RR42_RS02390 0.50 -0.7 539,139 + RR42_RS02390 0.50 -0.7 539,232 + RR42_RS02390 0.55 -0.3 539,232 + RR42_RS02390 0.55 -1.8 539,232 + RR42_RS02390 0.55 +2.5 539,291 + RR42_RS02390 0.58 +1.5 539,292 - RR42_RS02390 0.58 +0.5 539,587 + RR42_RS02390 0.73 +0.9 539,588 - RR42_RS02390 0.74 +0.7 539,588 - RR42_RS02390 0.74 -0.8 539,634 + RR42_RS02390 0.76 +0.2 539,901 + -1.6 539,902 - +0.6 540,084 + -1.5 540,253 + RR42_RS02395 0.28 -0.5 540,367 + RR42_RS02395 0.55 -0.6 540,367 + RR42_RS02395 0.55 -1.5 540,367 + RR42_RS02395 0.55 +1.2 540,367 + RR42_RS02395 0.55 -1.4 540,402 + RR42_RS02395 0.64 -1.5 540,412 + RR42_RS02395 0.66 -1.0 540,470 - RR42_RS02395 0.80 -1.1
Or see this region's nucleotide sequence