Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02110

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02105 and RR42_RS02110 are separated by 151 nucleotidesRR42_RS02110 and RR42_RS02115 are separated by 38 nucleotidesRR42_RS02115 and RR42_RS02120 are separated by 68 nucleotides RR42_RS02105: RR42_RS02105 - arabinose 5-phosphate isomerase, at 466,982 to 467,965 _RS02105 RR42_RS02110: RR42_RS02110 - potassium transporter, at 468,117 to 470,096 _RS02110 RR42_RS02115: RR42_RS02115 - arylsulfate sulfotransferase, at 470,135 to 470,518 _RS02115 RR42_RS02120: RR42_RS02120 - glutamine amidotransferase, at 470,587 to 471,165 _RS02120 Position (kb) 468 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 467.977 kb on - strandat 467.977 kb on - strandat 467.977 kb on - strandat 468.138 kb on - strandat 468.138 kb on - strandat 468.213 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strandat 469.251 kb on + strand, within RR42_RS02110at 469.278 kb on - strand, within RR42_RS02110at 469.418 kb on + strand, within RR42_RS02110at 469.419 kb on - strand, within RR42_RS02110at 469.419 kb on - strand, within RR42_RS02110at 469.422 kb on + strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.423 kb on - strand, within RR42_RS02110at 469.488 kb on + strand, within RR42_RS02110at 469.489 kb on - strand, within RR42_RS02110at 469.560 kb on + strand, within RR42_RS02110at 469.560 kb on + strand, within RR42_RS02110at 469.560 kb on + strand, within RR42_RS02110at 469.560 kb on + strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.561 kb on - strand, within RR42_RS02110at 469.661 kb on + strand, within RR42_RS02110at 469.803 kb on + strand, within RR42_RS02110at 469.822 kb on - strand, within RR42_RS02110at 469.822 kb on - strand, within RR42_RS02110at 469.822 kb on - strand, within RR42_RS02110at 470.105 kb on + strandat 470.105 kb on + strandat 470.105 kb on + strandat 470.105 kb on + strandat 470.106 kb on - strandat 470.275 kb on - strand, within RR42_RS02115at 470.275 kb on - strand, within RR42_RS02115at 470.288 kb on + strand, within RR42_RS02115at 470.288 kb on + strand, within RR42_RS02115at 470.289 kb on - strand, within RR42_RS02115at 470.289 kb on - strand, within RR42_RS02115at 470.329 kb on - strand, within RR42_RS02115at 470.445 kb on - strand, within RR42_RS02115at 470.518 kb on + strandat 470.518 kb on + strandat 470.518 kb on + strandat 470.519 kb on - strandat 470.588 kb on + strandat 470.588 kb on + strandat 470.589 kb on - strandat 470.593 kb on + strandat 470.594 kb on - strandat 470.711 kb on + strand, within RR42_RS02120at 470.711 kb on + strand, within RR42_RS02120at 470.832 kb on + strand, within RR42_RS02120at 470.832 kb on + strand, within RR42_RS02120at 470.888 kb on + strand, within RR42_RS02120at 470.888 kb on + strand, within RR42_RS02120at 470.991 kb on + strand, within RR42_RS02120at 470.992 kb on - strand, within RR42_RS02120at 470.993 kb on + strand, within RR42_RS02120at 470.993 kb on + strand, within RR42_RS02120at 470.993 kb on + strand, within RR42_RS02120at 470.993 kb on + strand, within RR42_RS02120at 470.993 kb on + strand, within RR42_RS02120at 470.994 kb on - strand, within RR42_RS02120at 470.994 kb on - strand, within RR42_RS02120at 470.994 kb on - strand, within RR42_RS02120at 471.075 kb on + strand, within RR42_RS02120at 471.076 kb on - strand, within RR42_RS02120at 471.076 kb on - strand, within RR42_RS02120

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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467,977 - -0.3
467,977 - -2.5
467,977 - -0.3
468,138 - -0.4
468,138 - -0.4
468,213 + -2.7
468,282 + -0.2
468,282 + -0.1
468,282 + +0.8
469,251 + RR42_RS02110 0.57 -2.3
469,278 - RR42_RS02110 0.59 -0.5
469,418 + RR42_RS02110 0.66 +1.4
469,419 - RR42_RS02110 0.66 -2.2
469,419 - RR42_RS02110 0.66 -1.1
469,422 + RR42_RS02110 0.66 -0.4
469,423 - RR42_RS02110 0.66 -0.9
469,423 - RR42_RS02110 0.66 +0.4
469,423 - RR42_RS02110 0.66 -0.4
469,423 - RR42_RS02110 0.66 -1.5
469,423 - RR42_RS02110 0.66 +1.4
469,423 - RR42_RS02110 0.66 +0.6
469,423 - RR42_RS02110 0.66 -3.4
469,423 - RR42_RS02110 0.66 +1.6
469,423 - RR42_RS02110 0.66 +0.4
469,423 - RR42_RS02110 0.66 -1.2
469,488 + RR42_RS02110 0.69 -1.0
469,489 - RR42_RS02110 0.69 -1.5
469,560 + RR42_RS02110 0.73 +0.9
469,560 + RR42_RS02110 0.73 +1.2
469,560 + RR42_RS02110 0.73 -0.0
469,560 + RR42_RS02110 0.73 -1.2
469,561 - RR42_RS02110 0.73 +0.6
469,561 - RR42_RS02110 0.73 -1.2
469,561 - RR42_RS02110 0.73 -0.9
469,561 - RR42_RS02110 0.73 -0.2
469,561 - RR42_RS02110 0.73 -1.6
469,561 - RR42_RS02110 0.73 -0.7
469,661 + RR42_RS02110 0.78 +0.2
469,803 + RR42_RS02110 0.85 -0.3
469,822 - RR42_RS02110 0.86 +0.4
469,822 - RR42_RS02110 0.86 -0.1
469,822 - RR42_RS02110 0.86 -0.8
470,105 + -1.6
470,105 + +1.2
470,105 + +0.3
470,105 + +0.2
470,106 - -0.1
470,275 - RR42_RS02115 0.36 -2.3
470,275 - RR42_RS02115 0.36 +0.4
470,288 + RR42_RS02115 0.40 +0.6
470,288 + RR42_RS02115 0.40 -0.1
470,289 - RR42_RS02115 0.40 -2.5
470,289 - RR42_RS02115 0.40 -1.9
470,329 - RR42_RS02115 0.51 +1.2
470,445 - RR42_RS02115 0.81 +2.5
470,518 + +1.9
470,518 + +0.0
470,518 + +1.2
470,519 - -0.3
470,588 + +1.2
470,588 + +0.9
470,589 - +1.2
470,593 + -0.4
470,594 - +0.5
470,711 + RR42_RS02120 0.21 -1.3
470,711 + RR42_RS02120 0.21 -0.5
470,832 + RR42_RS02120 0.42 +0.6
470,832 + RR42_RS02120 0.42 -0.1
470,888 + RR42_RS02120 0.52 -0.3
470,888 + RR42_RS02120 0.52 -0.3
470,991 + RR42_RS02120 0.70 +1.6
470,992 - RR42_RS02120 0.70 +0.2
470,993 + RR42_RS02120 0.70 -1.4
470,993 + RR42_RS02120 0.70 +0.2
470,993 + RR42_RS02120 0.70 +0.4
470,993 + RR42_RS02120 0.70 +1.5
470,993 + RR42_RS02120 0.70 -0.0
470,994 - RR42_RS02120 0.70 -1.2
470,994 - RR42_RS02120 0.70 -1.0
470,994 - RR42_RS02120 0.70 +0.1
471,075 + RR42_RS02120 0.84 -0.0
471,076 - RR42_RS02120 0.84 +0.1
471,076 - RR42_RS02120 0.84 -1.4

Or see this region's nucleotide sequence