Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02070 and RR42_RS02075 are separated by 35 nucleotides RR42_RS02075 and RR42_RS02080 are separated by 384 nucleotides RR42_RS02080 and RR42_RS02085 are separated by 49 nucleotides
RR42_RS02070: RR42_RS02070 - HPr kinase, at 460,970 to 461,941
_RS02070
RR42_RS02075: RR42_RS02075 - PTS sugar transporter subunit IIA, at 461,977 to 462,432
_RS02075
RR42_RS02080: RR42_RS02080 - ribosome hibernation promoting factor, at 462,817 to 463,167
_RS02080
RR42_RS02085: RR42_RS02085 - RNA polymerase subunit sigma-54, at 463,217 to 464,692
_RS02085
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 462.454 kb on - strand at 462.454 kb on - strand at 462.568 kb on - strand at 462.568 kb on - strand at 462.569 kb on + strand at 462.569 kb on + strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.603 kb on + strand at 462.604 kb on - strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.661 kb on + strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.673 kb on + strand at 462.673 kb on + strand at 462.674 kb on - strand at 462.674 kb on - strand at 462.674 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.685 kb on + strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.797 kb on - strand at 462.849 kb on - strand at 462.849 kb on - strand at 462.942 kb on - strand, within RR42_RS02080 at 462.942 kb on - strand, within RR42_RS02080 at 462.991 kb on + strand, within RR42_RS02080 at 462.991 kb on + strand, within RR42_RS02080 at 462.992 kb on - strand, within RR42_RS02080 at 463.032 kb on + strand, within RR42_RS02080 at 463.032 kb on + strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.089 kb on + strand, within RR42_RS02080 at 463.112 kb on + strand, within RR42_RS02080 at 463.112 kb on + strand, within RR42_RS02080 at 463.113 kb on - strand, within RR42_RS02080 at 463.113 kb on - strand, within RR42_RS02080 at 463.168 kb on - strand at 463.218 kb on + strand at 463.218 kb on + strand at 463.218 kb on + strand at 463.219 kb on - strand at 463.229 kb on - strand at 463.238 kb on + strand at 463.428 kb on - strand, within RR42_RS02085
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 462,454 - -2.4 462,454 - +1.0 462,568 - -1.1 462,568 - +1.0 462,569 + +0.2 462,569 + -0.8 462,570 - -0.4 462,570 - -1.4 462,570 - -1.3 462,570 - -1.7 462,570 - -1.6 462,570 - -0.9 462,570 - -0.7 462,570 - +1.4 462,570 - -0.9 462,603 + +0.1 462,604 - -2.7 462,657 + -0.8 462,657 + -0.8 462,657 + -1.8 462,657 + +0.2 462,657 + +0.2 462,658 - +0.6 462,658 - +0.8 462,658 - +1.3 462,658 - +0.4 462,658 - -0.3 462,661 + -0.2 462,662 - +0.3 462,662 - +0.4 462,662 - +0.5 462,662 - +1.2 462,662 - -0.5 462,673 + -0.7 462,673 + +1.2 462,674 - +0.6 462,674 - -0.5 462,674 - +0.5 462,682 - +1.4 462,682 - +1.3 462,682 - +0.1 462,682 - +0.4 462,682 - +0.2 462,685 + -0.8 462,686 - -2.0 462,686 - +1.8 462,686 - +0.5 462,686 - +1.1 462,722 - +0.3 462,722 - -0.2 462,722 - -0.1 462,797 - +1.2 462,849 - -1.2 462,849 - +2.3 462,942 - RR42_RS02080 0.36 +0.7 462,942 - RR42_RS02080 0.36 +1.4 462,991 + RR42_RS02080 0.50 +1.3 462,991 + RR42_RS02080 0.50 +0.8 462,992 - RR42_RS02080 0.50 +1.5 463,032 + RR42_RS02080 0.61 +0.7 463,032 + RR42_RS02080 0.61 +1.5 463,033 - RR42_RS02080 0.62 -0.9 463,033 - RR42_RS02080 0.62 +2.0 463,033 - RR42_RS02080 0.62 +2.2 463,057 + RR42_RS02080 0.68 +1.0 463,057 + RR42_RS02080 0.68 +0.8 463,057 + RR42_RS02080 0.68 -0.6 463,089 + RR42_RS02080 0.77 +1.5 463,112 + RR42_RS02080 0.84 +1.8 463,112 + RR42_RS02080 0.84 +1.6 463,113 - RR42_RS02080 0.84 +1.8 463,113 - RR42_RS02080 0.84 +0.2 463,168 - +1.4 463,218 + +2.2 463,218 + +2.2 463,218 + +0.8 463,219 - -0.8 463,229 - +0.5 463,238 + -0.2 463,428 - RR42_RS02085 0.14 +1.0
Or see this region's nucleotide sequence