Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02040

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02035 and RR42_RS02040 are separated by 140 nucleotidesRR42_RS02040 and RR42_RS02045 are separated by 283 nucleotides RR42_RS02035: RR42_RS02035 - hypothetical protein, at 452,266 to 454,149 _RS02035 RR42_RS02040: RR42_RS02040 - formamidopyrimidine-DNA glycosylase, at 454,290 to 455,171 _RS02040 RR42_RS02045: RR42_RS02045 - GTPase, at 455,455 to 457,398 _RS02045 Position (kb) 454 455 456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 453.891 kb on - strand, within RR42_RS02035at 454.190 kb on - strandat 454.190 kb on - strandat 454.200 kb on + strandat 454.201 kb on - strandat 454.201 kb on - strandat 454.201 kb on - strandat 454.201 kb on - strandat 454.211 kb on + strandat 454.211 kb on + strandat 454.212 kb on - strandat 454.212 kb on - strandat 454.464 kb on + strand, within RR42_RS02040at 454.464 kb on + strand, within RR42_RS02040at 454.465 kb on - strand, within RR42_RS02040at 454.465 kb on - strand, within RR42_RS02040at 454.792 kb on - strand, within RR42_RS02040at 454.792 kb on - strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 455.071 kb on - strand, within RR42_RS02040at 455.148 kb on + strandat 455.148 kb on + strandat 455.148 kb on + strandat 455.148 kb on + strandat 455.214 kb on - strandat 455.232 kb on + strandat 455.232 kb on + strandat 455.233 kb on - strandat 455.327 kb on - strandat 455.327 kb on - strandat 455.351 kb on + strandat 455.352 kb on - strandat 455.485 kb on + strandat 455.485 kb on + strandat 455.486 kb on - strandat 455.508 kb on - strandat 455.508 kb on - strandat 455.557 kb on + strandat 455.590 kb on - strandat 455.727 kb on + strandat 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.753 kb on - strand, within RR42_RS02045at 455.853 kb on + strand, within RR42_RS02045at 455.854 kb on - strand, within RR42_RS02045at 455.854 kb on - strand, within RR42_RS02045at 455.959 kb on + strand, within RR42_RS02045at 455.959 kb on + strand, within RR42_RS02045at 455.960 kb on - strand, within RR42_RS02045at 455.960 kb on - strand, within RR42_RS02045

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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453,891 - RR42_RS02035 0.86 +1.0
454,190 - -0.3
454,190 - +1.2
454,200 + +0.5
454,201 - +1.2
454,201 - +0.2
454,201 - -0.3
454,201 - +1.2
454,211 + +1.2
454,211 + +0.5
454,212 - +2.8
454,212 - -2.6
454,464 + RR42_RS02040 0.20 +2.0
454,464 + RR42_RS02040 0.20 +4.0
454,465 - RR42_RS02040 0.20 -2.4
454,465 - RR42_RS02040 0.20 +1.9
454,792 - RR42_RS02040 0.57 -0.6
454,792 - RR42_RS02040 0.57 +1.1
454,868 + RR42_RS02040 0.66 -0.3
454,868 + RR42_RS02040 0.66 -0.8
454,868 + RR42_RS02040 0.66 +1.2
454,868 + RR42_RS02040 0.66 -2.0
454,868 + RR42_RS02040 0.66 -0.3
454,869 - RR42_RS02040 0.66 -0.2
454,869 - RR42_RS02040 0.66 -0.6
454,869 - RR42_RS02040 0.66 -0.2
454,869 - RR42_RS02040 0.66 +0.2
454,869 - RR42_RS02040 0.66 +1.5
454,869 - RR42_RS02040 0.66 -0.6
454,869 - RR42_RS02040 0.66 -1.5
454,869 - RR42_RS02040 0.66 -0.2
454,872 + RR42_RS02040 0.66 +0.2
454,872 + RR42_RS02040 0.66 -0.2
454,872 + RR42_RS02040 0.66 -0.8
454,872 + RR42_RS02040 0.66 +1.4
454,872 + RR42_RS02040 0.66 -0.7
454,872 + RR42_RS02040 0.66 -1.3
454,872 + RR42_RS02040 0.66 -0.5
454,872 + RR42_RS02040 0.66 +1.7
454,872 + RR42_RS02040 0.66 +0.6
454,872 + RR42_RS02040 0.66 +0.7
454,872 + RR42_RS02040 0.66 +0.2
454,872 + RR42_RS02040 0.66 +2.3
454,873 - RR42_RS02040 0.66 +0.9
454,873 - RR42_RS02040 0.66 -0.6
454,873 - RR42_RS02040 0.66 -0.2
454,873 - RR42_RS02040 0.66 -0.8
454,873 - RR42_RS02040 0.66 +0.9
454,873 - RR42_RS02040 0.66 +0.1
454,873 - RR42_RS02040 0.66 -0.4
454,873 - RR42_RS02040 0.66 +1.8
454,873 - RR42_RS02040 0.66 +0.4
455,071 - RR42_RS02040 0.89 -1.4
455,148 + +0.6
455,148 + -0.1
455,148 + +0.3
455,148 + +1.0
455,214 - +3.2
455,232 + -1.3
455,232 + -0.2
455,233 - -0.0
455,327 - +0.2
455,327 - +0.4
455,351 + +1.6
455,352 - -1.0
455,485 + -3.5
455,485 + +1.2
455,486 - -1.3
455,508 - -2.6
455,508 - +0.1
455,557 + +1.2
455,590 - -0.4
455,727 + -0.4
455,727 + RR42_RS02045 0.14 -2.0
455,727 + RR42_RS02045 0.14 -0.8
455,727 + RR42_RS02045 0.14 -2.2
455,727 + RR42_RS02045 0.14 -4.6
455,728 - RR42_RS02045 0.14 -1.5
455,728 - RR42_RS02045 0.14 -2.8
455,728 - RR42_RS02045 0.14 +1.2
455,728 - RR42_RS02045 0.14 -2.9
455,728 - RR42_RS02045 0.14 -2.1
455,753 - RR42_RS02045 0.15 -4.0
455,853 + RR42_RS02045 0.20 -0.2
455,854 - RR42_RS02045 0.21 -1.8
455,854 - RR42_RS02045 0.21 -2.3
455,959 + RR42_RS02045 0.26 -1.8
455,959 + RR42_RS02045 0.26 -1.3
455,960 - RR42_RS02045 0.26 -3.1
455,960 - RR42_RS02045 0.26 +0.2

Or see this region's nucleotide sequence