Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01920 and RR42_RS01925 are separated by 148 nucleotides RR42_RS01925 and RR42_RS01930 are separated by 99 nucleotides
RR42_RS01920: RR42_RS01920 - protoheme IX farnesyltransferase, at 430,722 to 431,657
_RS01920
RR42_RS01925: RR42_RS01925 - photosynthetic protein synthase I, at 431,806 to 432,432
_RS01925
RR42_RS01930: RR42_RS01930 - RNA polymerase factor sigma-32, at 432,532 to 433,461
_RS01930
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 431.094 kb on + strand, within RR42_RS01920 at 431.155 kb on - strand, within RR42_RS01920 at 431.155 kb on - strand, within RR42_RS01920 at 431.426 kb on + strand, within RR42_RS01920 at 431.466 kb on - strand, within RR42_RS01920 at 431.481 kb on + strand, within RR42_RS01920 at 431.548 kb on - strand, within RR42_RS01920 at 431.592 kb on + strand at 431.592 kb on + strand at 431.592 kb on + strand at 431.631 kb on + strand at 431.631 kb on + strand at 431.632 kb on - strand at 431.632 kb on - strand at 431.738 kb on + strand at 431.739 kb on - strand at 431.739 kb on - strand at 431.739 kb on - strand at 432.046 kb on - strand, within RR42_RS01925 at 432.046 kb on - strand, within RR42_RS01925 at 432.046 kb on - strand, within RR42_RS01925 at 432.165 kb on + strand, within RR42_RS01925 at 432.165 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.188 kb on - strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.337 kb on + strand, within RR42_RS01925 at 432.337 kb on + strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.477 kb on + strand at 432.511 kb on + strand at 432.512 kb on - strand at 432.526 kb on + strand at 432.526 kb on + strand at 432.526 kb on + strand at 432.527 kb on - strand at 432.527 kb on - strand at 432.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 431,094 + RR42_RS01920 0.40 -1.3 431,155 - RR42_RS01920 0.46 +2.5 431,155 - RR42_RS01920 0.46 -0.7 431,426 + RR42_RS01920 0.75 +0.5 431,466 - RR42_RS01920 0.79 +0.2 431,481 + RR42_RS01920 0.81 -1.8 431,548 - RR42_RS01920 0.88 -0.6 431,592 + -1.8 431,592 + -2.1 431,592 + -1.1 431,631 + +1.7 431,631 + +0.9 431,632 - +3.0 431,632 - +2.4 431,738 + +0.9 431,739 - +0.9 431,739 - +1.8 431,739 - -2.6 432,046 - RR42_RS01925 0.38 +0.9 432,046 - RR42_RS01925 0.38 +1.6 432,046 - RR42_RS01925 0.38 +1.5 432,165 + RR42_RS01925 0.57 +0.1 432,165 + RR42_RS01925 0.57 +2.8 432,187 + RR42_RS01925 0.61 +0.9 432,187 + RR42_RS01925 0.61 +1.7 432,187 + RR42_RS01925 0.61 +2.5 432,187 + RR42_RS01925 0.61 +1.7 432,188 - RR42_RS01925 0.61 +1.7 432,277 + RR42_RS01925 0.75 +1.1 432,277 + RR42_RS01925 0.75 +2.0 432,277 + RR42_RS01925 0.75 +2.2 432,311 - RR42_RS01925 0.81 +0.9 432,311 - RR42_RS01925 0.81 +2.0 432,311 - RR42_RS01925 0.81 +0.1 432,337 + RR42_RS01925 0.85 +0.5 432,337 + RR42_RS01925 0.85 +0.9 432,338 - RR42_RS01925 0.85 +0.3 432,338 - RR42_RS01925 0.85 +2.9 432,338 - RR42_RS01925 0.85 -0.6 432,338 - RR42_RS01925 0.85 +0.9 432,477 + +1.2 432,511 + +0.5 432,512 - -0.5 432,526 + -0.0 432,526 + -1.1 432,526 + +0.6 432,527 - -0.6 432,527 - -0.1 432,527 - +0.1
Or see this region's nucleotide sequence