Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01645 and RR42_RS01650 are separated by 102 nucleotides RR42_RS01650 and RR42_RS01655 are separated by 160 nucleotides
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
RR42_RS01650: RR42_RS01650 - branched-chain amino acid ABC transporter ATP-binding protein, at 376,432 to 377,247
_RS01650
RR42_RS01655: RR42_RS01655 - AMP-dependent synthetase, at 377,408 to 378,658
_RS01655
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.933 kb on + strand, within RR42_RS01645 at 375.934 kb on - strand, within RR42_RS01645 at 375.967 kb on + strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 376.030 kb on + strand, within RR42_RS01645 at 376.031 kb on - strand, within RR42_RS01645 at 376.456 kb on - strand at 376.468 kb on + strand at 376.468 kb on + strand at 376.469 kb on - strand at 376.469 kb on - strand at 376.760 kb on - strand, within RR42_RS01650 at 376.760 kb on - strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.811 kb on - strand, within RR42_RS01650 at 377.060 kb on - strand, within RR42_RS01650 at 377.074 kb on + strand, within RR42_RS01650 at 377.075 kb on - strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.153 kb on - strand, within RR42_RS01650 at 377.218 kb on + strand at 377.218 kb on + strand at 377.218 kb on + strand at 377.370 kb on - strand at 377.392 kb on - strand at 377.400 kb on + strand at 377.401 kb on - strand at 377.417 kb on + strand at 377.517 kb on - strand at 377.786 kb on + strand, within RR42_RS01655 at 377.786 kb on + strand, within RR42_RS01655 at 377.801 kb on + strand, within RR42_RS01655 at 378.089 kb on + strand, within RR42_RS01655 at 378.089 kb on + strand, within RR42_RS01655 at 378.090 kb on - strand, within RR42_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 375,541 + RR42_RS01645 0.41 +0.7 375,541 + RR42_RS01645 0.41 -0.2 375,541 + RR42_RS01645 0.41 +1.8 375,547 + RR42_RS01645 0.41 +0.6 375,563 - RR42_RS01645 0.43 -0.1 375,563 - RR42_RS01645 0.43 +2.3 375,697 + RR42_RS01645 0.53 -0.1 375,844 + RR42_RS01645 0.64 -1.8 375,844 + RR42_RS01645 0.64 +0.9 375,844 + RR42_RS01645 0.64 +1.1 375,844 + RR42_RS01645 0.64 -0.3 375,844 + RR42_RS01645 0.64 +1.0 375,845 - RR42_RS01645 0.64 -2.6 375,845 - RR42_RS01645 0.64 +0.8 375,846 + RR42_RS01645 0.64 +0.4 375,846 + RR42_RS01645 0.64 -0.4 375,933 + RR42_RS01645 0.70 -0.2 375,934 - RR42_RS01645 0.70 +0.7 375,967 + RR42_RS01645 0.73 +0.9 375,968 - RR42_RS01645 0.73 -0.1 375,968 - RR42_RS01645 0.73 +1.9 376,030 + RR42_RS01645 0.78 +0.2 376,031 - RR42_RS01645 0.78 +0.1 376,456 - -0.1 376,468 + +0.5 376,468 + -1.1 376,469 - -0.7 376,469 - +0.1 376,760 - RR42_RS01650 0.40 -1.8 376,760 - RR42_RS01650 0.40 -3.2 376,761 + RR42_RS01650 0.40 +0.8 376,761 + RR42_RS01650 0.40 -0.6 376,761 + RR42_RS01650 0.40 +0.2 376,811 - RR42_RS01650 0.46 -1.4 377,060 - RR42_RS01650 0.77 -0.0 377,074 + RR42_RS01650 0.79 -1.0 377,075 - RR42_RS01650 0.79 -2.5 377,152 + RR42_RS01650 0.88 +1.6 377,152 + RR42_RS01650 0.88 +0.5 377,153 - RR42_RS01650 0.88 -0.4 377,218 + +1.5 377,218 + -0.1 377,218 + -0.4 377,370 - -0.4 377,392 - +0.7 377,400 + -0.1 377,401 - +0.9 377,417 + -2.4 377,517 - +1.0 377,786 + RR42_RS01655 0.30 +0.2 377,786 + RR42_RS01655 0.30 +1.5 377,801 + RR42_RS01655 0.31 -1.8 378,089 + RR42_RS01655 0.54 +1.2 378,089 + RR42_RS01655 0.54 +0.2 378,090 - RR42_RS01655 0.55 +1.7
Or see this region's nucleotide sequence